Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 227581 | 0.66 | 0.732317 |
Target: 5'- cGCCGGCg-CAGCAGa-GCCcCGCCa- -3' miRNA: 3'- -UGGCCGagGUCGUCgaCGGaGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 225465 | 0.7 | 0.463087 |
Target: 5'- cGCCGGuCUaCCAGCAGCcGCCgUCgACCg- -3' miRNA: 3'- -UGGCC-GA-GGUCGUCGaCGG-AG-UGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 219345 | 0.66 | 0.71228 |
Target: 5'- cGCCGGCUgcCCGGCGuccgcgagguccuGC-GCCUCugCUc -3' miRNA: 3'- -UGGCCGA--GGUCGU-------------CGaCGGAGugGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 218179 | 0.66 | 0.703603 |
Target: 5'- cUCGGUacgCCGGCucCUGCCUCGCCc- -3' miRNA: 3'- uGGCCGa--GGUCGucGACGGAGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 217581 | 0.68 | 0.585793 |
Target: 5'- aGCCGG-UCCGGCGGCgccGCCUCGg--- -3' miRNA: 3'- -UGGCCgAGGUCGUCGa--CGGAGUggaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 209849 | 0.67 | 0.684166 |
Target: 5'- gAUCGGCUCUu-CGGCUGCCUgcgggaCGCCg- -3' miRNA: 3'- -UGGCCGAGGucGUCGACGGA------GUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 209466 | 0.74 | 0.304232 |
Target: 5'- uUCGGCUCCGGCgaacaccGGCUGCUcgUCGCCg- -3' miRNA: 3'- uGGCCGAGGUCG-------UCGACGG--AGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 199367 | 1.04 | 0.002475 |
Target: 5'- cACCGGCUCCAGCAGCUGCCUCACCUUc -3' miRNA: 3'- -UGGCCGAGGUCGUCGACGGAGUGGAA- -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 195364 | 0.66 | 0.722815 |
Target: 5'- cCCGGgUgCUGGuCGGCUGCCuggUCACCUg -3' miRNA: 3'- uGGCCgA-GGUC-GUCGACGG---AGUGGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 193333 | 0.76 | 0.205888 |
Target: 5'- cCCGGCUCCAGCGGaacgGgCUCGCCa- -3' miRNA: 3'- uGGCCGAGGUCGUCga--CgGAGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 192649 | 0.67 | 0.65473 |
Target: 5'- -aCGGCUCgCgggGGCGGCUGCCcCACUc- -3' miRNA: 3'- ugGCCGAG-G---UCGUCGACGGaGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 190114 | 0.71 | 0.419499 |
Target: 5'- uCCGGCgcuuccaCGGCAGCUGCgugcugCUCGCCUg -3' miRNA: 3'- uGGCCGag-----GUCGUCGACG------GAGUGGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 188774 | 0.7 | 0.463087 |
Target: 5'- -gCGGUUCCGGCGGCggcuccgGCCUCGgCg- -3' miRNA: 3'- ugGCCGAGGUCGUCGa------CGGAGUgGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 188649 | 0.66 | 0.722815 |
Target: 5'- cGCCGGCggCGGCGGCgGCCcgUCGuCCg- -3' miRNA: 3'- -UGGCCGagGUCGUCGaCGG--AGU-GGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 187744 | 0.67 | 0.63501 |
Target: 5'- gGCCGccaUCCAGCAGCUGCgUUGCg-- -3' miRNA: 3'- -UGGCcg-AGGUCGUCGACGgAGUGgaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 182630 | 0.66 | 0.73137 |
Target: 5'- gGCCGcGCgaucuucUCCAGCGccuGCgucucgGCCUCGCCg- -3' miRNA: 3'- -UGGC-CG-------AGGUCGU---CGa-----CGGAGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 179442 | 0.66 | 0.732317 |
Target: 5'- gGCCGGCgucuucuggacaUCCGGC-GCcgGCCUCuuCCUg -3' miRNA: 3'- -UGGCCG------------AGGUCGuCGa-CGGAGu-GGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 170136 | 0.66 | 0.741738 |
Target: 5'- -aCGGCaccgucuccucgUCCAGCAGCaggGCCcggaUCACCg- -3' miRNA: 3'- ugGCCG------------AGGUCGUCGa--CGG----AGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 169546 | 0.75 | 0.260256 |
Target: 5'- cCCGGCUgcCCGGCGGCgugGCCuUCGCCg- -3' miRNA: 3'- uGGCCGA--GGUCGUCGa--CGG-AGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 167016 | 0.66 | 0.713241 |
Target: 5'- cACCGGCgUCgCGGCcccgauGCUGCCcUGCCUg -3' miRNA: 3'- -UGGCCG-AG-GUCGu-----CGACGGaGUGGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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