Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8973 | 5' | -61.3 | NC_002512.2 | + | 225465 | 0.7 | 0.463087 |
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Target: 5'- cGCCGGuCUaCCAGCAGCcGCCgUCgACCg- -3' miRNA: 3'- -UGGCC-GA-GGUCGUCGaCGG-AG-UGGaa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 190114 | 0.71 | 0.419499 |
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Target: 5'- uCCGGCgcuuccaCGGCAGCUGCgugcugCUCGCCUg -3' miRNA: 3'- uGGCCGag-----GUCGUCGACG------GAGUGGAa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 129946 | 0.71 | 0.419499 |
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Target: 5'- cACCGGCggCAGCAGCaGCCgaCGCCg- -3' miRNA: 3'- -UGGCCGagGUCGUCGaCGGa-GUGGaa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 209466 | 0.74 | 0.304232 |
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Target: 5'- uUCGGCUCCGGCgaacaccGGCUGCUcgUCGCCg- -3' miRNA: 3'- uGGCCGAGGUCG-------UCGACGG--AGUGGaa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 126521 | 0.74 | 0.285085 |
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Target: 5'- -gCGGCUCCGGCGGcCUGaCCUCgACCg- -3' miRNA: 3'- ugGCCGAGGUCGUC-GAC-GGAG-UGGaa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 169546 | 0.75 | 0.260256 |
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Target: 5'- cCCGGCUgcCCGGCGGCgugGCCuUCGCCg- -3' miRNA: 3'- uGGCCGA--GGUCGUCGa--CGG-AGUGGaa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 193333 | 0.76 | 0.205888 |
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Target: 5'- cCCGGCUCCAGCGGaacgGgCUCGCCa- -3' miRNA: 3'- uGGCCGAGGUCGUCga--CgGAGUGGaa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 149882 | 0.76 | 0.205888 |
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Target: 5'- uCCGGCUCCGGCugccGCUGCCUgGaCCUc -3' miRNA: 3'- uGGCCGAGGUCGu---CGACGGAgU-GGAa -5' |
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| 8973 | 5' | -61.3 | NC_002512.2 | + | 199367 | 1.04 | 0.002475 |
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Target: 5'- cACCGGCUCCAGCAGCUGCCUCACCUUc -3' miRNA: 3'- -UGGCCGAGGUCGUCGACGGAGUGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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