Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 104010 | 0.67 | 0.65473 |
Target: 5'- uCCGGUUCCAGCcG-UGCC-CGCCg- -3' miRNA: 3'- uGGCCGAGGUCGuCgACGGaGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 192649 | 0.67 | 0.65473 |
Target: 5'- -aCGGCUCgCgggGGCGGCUGCCcCACUc- -3' miRNA: 3'- ugGCCGAG-G---UCGUCGACGGaGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 49680 | 0.67 | 0.644875 |
Target: 5'- gGCCGGCagCCAGUgcaugucgaaCUGCUUCGCCUUc -3' miRNA: 3'- -UGGCCGa-GGUCGuc--------GACGGAGUGGAA- -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 34970 | 0.67 | 0.644875 |
Target: 5'- gACCGGgUCCGGCuGg-GCCUCGCg-- -3' miRNA: 3'- -UGGCCgAGGUCGuCgaCGGAGUGgaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 80372 | 0.67 | 0.63501 |
Target: 5'- gGCCGGCccgcUCCGGCcGCgGCCUUuugACCa- -3' miRNA: 3'- -UGGCCG----AGGUCGuCGaCGGAG---UGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 187744 | 0.67 | 0.63501 |
Target: 5'- gGCCGccaUCCAGCAGCUGCgUUGCg-- -3' miRNA: 3'- -UGGCcg-AGGUCGUCGACGgAGUGgaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 124818 | 0.67 | 0.63501 |
Target: 5'- cGCCGGCUucuUCGGCuGCgUGCCggaCACCg- -3' miRNA: 3'- -UGGCCGA---GGUCGuCG-ACGGa--GUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 117588 | 0.67 | 0.634023 |
Target: 5'- cACCGGCaUCgAGCAGCUcugcguggauuacGCCcugCACCg- -3' miRNA: 3'- -UGGCCG-AGgUCGUCGA-------------CGGa--GUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 126445 | 0.68 | 0.614296 |
Target: 5'- gGCCGGCgaCGGCGGCgGCCgccuuguUCGCCg- -3' miRNA: 3'- -UGGCCGagGUCGUCGaCGG-------AGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 119582 | 0.68 | 0.61134 |
Target: 5'- cCCGGCggguccccucgcgCCAGCAGUgucGCCcUCGCCg- -3' miRNA: 3'- uGGCCGa------------GGUCGUCGa--CGG-AGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 112793 | 0.68 | 0.585793 |
Target: 5'- uGCCGGgUCCAG-GGCgGCCcgCACCUc -3' miRNA: 3'- -UGGCCgAGGUCgUCGaCGGa-GUGGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 217581 | 0.68 | 0.585793 |
Target: 5'- aGCCGG-UCCGGCGGCgccGCCUCGg--- -3' miRNA: 3'- -UGGCCgAGGUCGUCGa--CGGAGUggaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 107495 | 0.68 | 0.585793 |
Target: 5'- gACCGGC-CC-GCAGCgGUCUCugCg- -3' miRNA: 3'- -UGGCCGaGGuCGUCGaCGGAGugGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 73817 | 0.68 | 0.576017 |
Target: 5'- uGCCGGCgcCCGGCGuCgaugaGCCUCGCCg- -3' miRNA: 3'- -UGGCCGa-GGUCGUcGa----CGGAGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 81040 | 0.68 | 0.576017 |
Target: 5'- aGCCGGCguUCCGGCAGCggugcGCCcggacCGCCc- -3' miRNA: 3'- -UGGCCG--AGGUCGUCGa----CGGa----GUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 148854 | 0.69 | 0.537343 |
Target: 5'- uGCCGGaacgCCGGCuGCcGCCUcCGCCUg -3' miRNA: 3'- -UGGCCga--GGUCGuCGaCGGA-GUGGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 102332 | 0.7 | 0.499604 |
Target: 5'- gGCCGGCUCCGGUacgacaAGCgcguCCUCgGCCUg -3' miRNA: 3'- -UGGCCGAGGUCG------UCGac--GGAG-UGGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 115777 | 0.7 | 0.49035 |
Target: 5'- gACCGGaUCCcGCAGC-GCCUgACCUa -3' miRNA: 3'- -UGGCCgAGGuCGUCGaCGGAgUGGAa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 62143 | 0.7 | 0.49035 |
Target: 5'- cGCCGacGC-CCGGCAGCU-CCUCGCCc- -3' miRNA: 3'- -UGGC--CGaGGUCGUCGAcGGAGUGGaa -5' |
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8973 | 5' | -61.3 | NC_002512.2 | + | 225465 | 0.7 | 0.463087 |
Target: 5'- cGCCGGuCUaCCAGCAGCcGCCgUCgACCg- -3' miRNA: 3'- -UGGCC-GA-GGUCGUCGaCGG-AG-UGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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