miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 17848 0.66 0.707876
Target:  5'- aGCAGCuccucccgGGCG-CGGuGcucgcgcaGGGCCCGggGg -3'
miRNA:   3'- -CGUCGca------CCGCuGCC-C--------CCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 20883 0.67 0.670529
Target:  5'- gGCGGCGa--CGACGGGGgaagaGGCgCGAGGa -3'
miRNA:   3'- -CGUCGCaccGCUGCCCC-----CCGgGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 29740 0.74 0.282122
Target:  5'- ---cCGUGGCGGCGcgcgaGGGGGCCCGgcGa -3'
miRNA:   3'- cgucGCACCGCUGC-----CCCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 31670 0.69 0.557549
Target:  5'- cGCGGcCGUGGUGGCGGacGGGGa--GGAGg -3'
miRNA:   3'- -CGUC-GCACCGCUGCC--CCCCgggCUUC- -5'
8974 3' -62.9 NC_002512.2 + 34935 0.7 0.493925
Target:  5'- gGCGGgGUcgcGGCGACGGGGagcggagcGGCCgCGAc- -3'
miRNA:   3'- -CGUCgCA---CCGCUGCCCC--------CCGG-GCUuc -5'
8974 3' -62.9 NC_002512.2 + 42587 0.73 0.355863
Target:  5'- -aGGCGa-GCGGCGGGGcGGaCCCGAAGc -3'
miRNA:   3'- cgUCGCacCGCUGCCCC-CC-GGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 43087 0.72 0.401446
Target:  5'- cGgGGCGcGGCGagcaGCGGGGacGGCUCGAGGg -3'
miRNA:   3'- -CgUCGCaCCGC----UGCCCC--CCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 45024 0.66 0.744343
Target:  5'- aGCAGCGcacGCuGACGGuGGaCCCGAGGa -3'
miRNA:   3'- -CGUCGCac-CG-CUGCCcCCcGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 45526 0.67 0.661108
Target:  5'- cGCGGCG-GGCGGCGGcGGcGaCuuGggGu -3'
miRNA:   3'- -CGUCGCaCCGCUGCCcCC-C-GggCuuC- -5'
8974 3' -62.9 NC_002512.2 + 54254 0.67 0.658278
Target:  5'- cGCAGCGgcagGGCGGCGGcgucGGcGacccuggcaccccaCCCGAAGg -3'
miRNA:   3'- -CGUCGCa---CCGCUGCCc---CC-C--------------GGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 64594 0.69 0.56685
Target:  5'- aGCGGCGcgcGGCGAgaUGGagacgcugaaaGGGGUCCGggGc -3'
miRNA:   3'- -CGUCGCa--CCGCU--GCC-----------CCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 70702 0.71 0.417445
Target:  5'- -gGGCG-GGgGACGGGGGGa-CGggGg -3'
miRNA:   3'- cgUCGCaCCgCUGCCCCCCggGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 74644 0.66 0.735334
Target:  5'- aCGGCccgGGgGAgauCGGGGGaGCUCGggGg -3'
miRNA:   3'- cGUCGca-CCgCU---GCCCCC-CGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 75074 0.67 0.689283
Target:  5'- gGCGGCGacgucgaGGCGcCGuuucGGGGGCUCGAc- -3'
miRNA:   3'- -CGUCGCa------CCGCuGC----CCCCCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 75276 0.68 0.594966
Target:  5'- gGCGGCGacGGCGGCGGcGGcGGCgaCGAu- -3'
miRNA:   3'- -CGUCGCa-CCGCUGCC-CC-CCGg-GCUuc -5'
8974 3' -62.9 NC_002512.2 + 79937 0.68 0.632753
Target:  5'- -aGGCcgaGGCGGCGcGGGGGUCCGc-- -3'
miRNA:   3'- cgUCGca-CCGCUGC-CCCCCGGGCuuc -5'
8974 3' -62.9 NC_002512.2 + 80677 0.81 0.101375
Target:  5'- cGCGGCGgcGGCGACGGGGGcgagcggcGUCCGggGg -3'
miRNA:   3'- -CGUCGCa-CCGCUGCCCCC--------CGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 80749 0.66 0.717093
Target:  5'- cGCGGCGgucccgGGUccCGGGGguccucgcGGCUCGAGGa -3'
miRNA:   3'- -CGUCGCa-----CCGcuGCCCC--------CCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 80824 0.66 0.707876
Target:  5'- uCGGCGU--CGGCGGaGGGGCCCcguAGg -3'
miRNA:   3'- cGUCGCAccGCUGCC-CCCCGGGcu-UC- -5'
8974 3' -62.9 NC_002512.2 + 81430 0.68 0.57619
Target:  5'- cGCGGCuccGUcccGCGGGGGGCCCGGc- -3'
miRNA:   3'- -CGUCGcacCGc--UGCCCCCCGGGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.