miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 86 0.71 0.433826
Target:  5'- -aGGCGagaGGCGGCGGGGGGagaGGAGg -3'
miRNA:   3'- cgUCGCa--CCGCUGCCCCCCgggCUUC- -5'
8974 3' -62.9 NC_002512.2 + 161 0.66 0.744343
Target:  5'- gGCGGCaggaGGCGGCaGaGGaGGCCgGAGGg -3'
miRNA:   3'- -CGUCGca--CCGCUGcC-CC-CCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 281 0.73 0.341499
Target:  5'- -gAGCG-GcGCGACGGGGGGCCaGGGc -3'
miRNA:   3'- cgUCGCaC-CGCUGCCCCCCGGgCUUc -5'
8974 3' -62.9 NC_002512.2 + 2296 0.74 0.310075
Target:  5'- cGCuGCG-GGUGGCGGGGcucugcugcgccggcGGUCCGGAGg -3'
miRNA:   3'- -CGuCGCaCCGCUGCCCC---------------CCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 2811 0.7 0.493925
Target:  5'- cCGGCGggacccGGCG-CGGGcgcGGGCCCGGAc -3'
miRNA:   3'- cGUCGCa-----CCGCuGCCC---CCCGGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 3062 0.73 0.32756
Target:  5'- gGCGGCGgacgcGGCGGCGGcGGcGGCCaCGgcGg -3'
miRNA:   3'- -CGUCGCa----CCGCUGCC-CC-CCGG-GCuuC- -5'
8974 3' -62.9 NC_002512.2 + 4571 0.69 0.565918
Target:  5'- uGCGGCGUcuggGGCGGCGGaGgaggcggcgccgcGGGCCgCGAGa -3'
miRNA:   3'- -CGUCGCA----CCGCUGCC-C-------------CCCGG-GCUUc -5'
8974 3' -62.9 NC_002512.2 + 4877 0.66 0.747924
Target:  5'- uGCGGCGccggcuggaggagcGGCGACGGGaagaGGGCgCCGc-- -3'
miRNA:   3'- -CGUCGCa-------------CCGCUGCCC----CCCG-GGCuuc -5'
8974 3' -62.9 NC_002512.2 + 5161 0.67 0.651667
Target:  5'- gGCAGCG-GcGCGAcCGGGGcGGCggCCGGc- -3'
miRNA:   3'- -CGUCGCaC-CGCU-GCCCC-CCG--GGCUuc -5'
8974 3' -62.9 NC_002512.2 + 5895 0.68 0.623291
Target:  5'- cGCu-CGUGGaCGGCGGGGcGCgCGggGg -3'
miRNA:   3'- -CGucGCACC-GCUGCCCCcCGgGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 7253 0.69 0.539084
Target:  5'- cGCGGCGgagcGGCGuccguCGGGaucGGGCgCGAGGc -3'
miRNA:   3'- -CGUCGCa---CCGCu----GCCC---CCCGgGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 7370 0.67 0.670529
Target:  5'- aCGGCGgccGCGGCGGGcGGCCaggcgcaGAAGg -3'
miRNA:   3'- cGUCGCac-CGCUGCCCcCCGGg------CUUC- -5'
8974 3' -62.9 NC_002512.2 + 9465 0.74 0.300958
Target:  5'- gGCGGC-UGGCcguaGGCGGGcGGGCCCGcGAGc -3'
miRNA:   3'- -CGUCGcACCG----CUGCCC-CCCGGGC-UUC- -5'
8974 3' -62.9 NC_002512.2 + 10929 0.71 0.459081
Target:  5'- cCAGCc-GGCGACGGaGGGGUCgaCGAGGa -3'
miRNA:   3'- cGUCGcaCCGCUGCC-CCCCGG--GCUUC- -5'
8974 3' -62.9 NC_002512.2 + 11370 0.67 0.670529
Target:  5'- --cGCGUcGGaCGACGaGGGGUCCGAc- -3'
miRNA:   3'- cguCGCA-CC-GCUGCcCCCCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 11671 0.72 0.393595
Target:  5'- cGCGGCccgccgcGGCccGAgGcGGGGGCCCGAGGg -3'
miRNA:   3'- -CGUCGca-----CCG--CUgC-CCCCCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 11719 0.66 0.735334
Target:  5'- cCGGCGUaccgaGGCuACGGGGacgaGGCCgGGAGc -3'
miRNA:   3'- cGUCGCA-----CCGcUGCCCC----CCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 12113 0.78 0.179763
Target:  5'- gGCcGCGaccccGGCGACGGGgacGGGCCCGggGu -3'
miRNA:   3'- -CGuCGCa----CCGCUGCCC---CCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 13983 0.67 0.651667
Target:  5'- aCGGgGaagGGgGACGGGGGGa-CGAGGg -3'
miRNA:   3'- cGUCgCa--CCgCUGCCCCCCggGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 17444 0.67 0.679923
Target:  5'- cGCGGCGgucGCGGcCGGccGGCCCGAAc -3'
miRNA:   3'- -CGUCGCac-CGCU-GCCccCCGGGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.