miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 10929 0.71 0.459081
Target:  5'- cCAGCc-GGCGACGGaGGGGUCgaCGAGGa -3'
miRNA:   3'- cGUCGcaCCGCUGCC-CCCCGG--GCUUC- -5'
8974 3' -62.9 NC_002512.2 + 82347 0.72 0.393595
Target:  5'- gGUAGCGgugGGCGuGCGGGGGcGgCgGAGGg -3'
miRNA:   3'- -CGUCGCa--CCGC-UGCCCCC-CgGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 43087 0.72 0.401446
Target:  5'- cGgGGCGcGGCGagcaGCGGGGacGGCUCGAGGg -3'
miRNA:   3'- -CgUCGCaCCGC----UGCCCC--CCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 70702 0.71 0.417445
Target:  5'- -gGGCG-GGgGACGGGGGGa-CGggGg -3'
miRNA:   3'- cgUCGCaCCgCUGCCCCCCggGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 128805 0.71 0.417445
Target:  5'- cCGGCGUGGUccGCGGGcGGGCCCu--- -3'
miRNA:   3'- cGUCGCACCGc-UGCCC-CCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 86 0.71 0.433826
Target:  5'- -aGGCGagaGGCGGCGGGGGGagaGGAGg -3'
miRNA:   3'- cgUCGCa--CCGCUGCCCCCCgggCUUC- -5'
8974 3' -62.9 NC_002512.2 + 229490 0.71 0.433826
Target:  5'- -aGGCGagaGGCGGCGGGGGGagaGGAGg -3'
miRNA:   3'- cgUCGCa--CCGCUGCCCCCCgggCUUC- -5'
8974 3' -62.9 NC_002512.2 + 108428 0.71 0.442156
Target:  5'- gGCGGCG-GGCG-CGGGgcggaccccucaGGGCuCCGggGc -3'
miRNA:   3'- -CGUCGCaCCGCuGCCC------------CCCG-GGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 130135 0.71 0.459081
Target:  5'- cCGGgGUGGUGucGCGGccgcGGGGCCCGgcGg -3'
miRNA:   3'- cGUCgCACCGC--UGCC----CCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 11671 0.72 0.393595
Target:  5'- cGCGGCccgccgcGGCccGAgGcGGGGGCCCGAGGg -3'
miRNA:   3'- -CGUCGca-----CCG--CUgC-CCCCCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 139278 0.72 0.377434
Target:  5'- gGCGcGCGggGGCGAaGGGGGGCgcccgccCCGggGg -3'
miRNA:   3'- -CGU-CGCa-CCGCUgCCCCCCG-------GGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 42587 0.73 0.355863
Target:  5'- -aGGCGa-GCGGCGGGGcGGaCCCGAAGc -3'
miRNA:   3'- cgUCGCacCGCUGCCCC-CC-GGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 12113 0.78 0.179763
Target:  5'- gGCcGCGaccccGGCGACGGGgacGGGCCCGggGu -3'
miRNA:   3'- -CGuCGCa----CCGCUGCCC---CCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 81977 0.77 0.192699
Target:  5'- gGCGGgugGUGGCGGCGGGGGcGUCuCGggGg -3'
miRNA:   3'- -CGUCg--CACCGCUGCCCCC-CGG-GCuuC- -5'
8974 3' -62.9 NC_002512.2 + 82427 0.74 0.281511
Target:  5'- cGCGGCGgaGGgGACGaGGGGGCgucggucccgcucCCGAAGg -3'
miRNA:   3'- -CGUCGCa-CCgCUGC-CCCCCG-------------GGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 29740 0.74 0.282122
Target:  5'- ---cCGUGGCGGCGcgcgaGGGGGCCCGgcGa -3'
miRNA:   3'- cgucGCACCGCUGC-----CCCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 9465 0.74 0.300958
Target:  5'- gGCGGC-UGGCcguaGGCGGGcGGGCCCGcGAGc -3'
miRNA:   3'- -CGUCGcACCG----CUGCCC-CCCGGGC-UUC- -5'
8974 3' -62.9 NC_002512.2 + 2296 0.74 0.310075
Target:  5'- cGCuGCG-GGUGGCGGGGcucugcugcgccggcGGUCCGGAGg -3'
miRNA:   3'- -CGuCGCaCCGCUGCCCC---------------CCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 140973 0.73 0.32756
Target:  5'- --cGCGUGGUGAccgaucggauCGGGGGGCaCGggGg -3'
miRNA:   3'- cguCGCACCGCU----------GCCCCCCGgGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 3062 0.73 0.32756
Target:  5'- gGCGGCGgacgcGGCGGCGGcGGcGGCCaCGgcGg -3'
miRNA:   3'- -CGUCGCa----CCGCUGCC-CC-CCGG-GCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.