miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 198669 1.09 0.001216
Target:  5'- aGCAGCGUGGCGACGGGGGGCCCGAAGu -3'
miRNA:   3'- -CGUCGCACCGCUGCCCCCCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 80677 0.81 0.101375
Target:  5'- cGCGGCGgcGGCGACGGGGGcgagcggcGUCCGggGg -3'
miRNA:   3'- -CGUCGCa-CCGCUGCCCCC--------CGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 204697 0.81 0.106431
Target:  5'- cGCGGCGgacgcgacgucGGCGACGGcGGGCCCGggGc -3'
miRNA:   3'- -CGUCGCa----------CCGCUGCCcCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 95699 0.8 0.132243
Target:  5'- cCGGCG-GG-GACGGGGGGCCgGGAGg -3'
miRNA:   3'- cGUCGCaCCgCUGCCCCCCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 12113 0.78 0.179763
Target:  5'- gGCcGCGaccccGGCGACGGGgacGGGCCCGggGu -3'
miRNA:   3'- -CGuCGCa----CCGCUGCCC---CCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 81977 0.77 0.192699
Target:  5'- gGCGGgugGUGGCGGCGGGGGcGUCuCGggGg -3'
miRNA:   3'- -CGUCg--CACCGCUGCCCCC-CGG-GCuuC- -5'
8974 3' -62.9 NC_002512.2 + 109857 0.77 0.206442
Target:  5'- cCGGCGUGGCGGCGGuGGGGaCCUa--- -3'
miRNA:   3'- cGUCGCACCGCUGCC-CCCC-GGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 94641 0.75 0.276055
Target:  5'- cGCGGCGcGGaCGACGGccucgaGGcGGCCCGggGc -3'
miRNA:   3'- -CGUCGCaCC-GCUGCC------CC-CCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 82427 0.74 0.281511
Target:  5'- cGCGGCGgaGGgGACGaGGGGGCgucggucccgcucCCGAAGg -3'
miRNA:   3'- -CGUCGCa-CCgCUGC-CCCCCG-------------GGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 157126 0.74 0.282122
Target:  5'- cCGGCGUcgggGGuCGGCGGcGGGCCCGggGc -3'
miRNA:   3'- cGUCGCA----CC-GCUGCCcCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 29740 0.74 0.282122
Target:  5'- ---cCGUGGCGGCGcgcgaGGGGGCCCGgcGa -3'
miRNA:   3'- cgucGCACCGCUGC-----CCCCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 227631 0.74 0.300958
Target:  5'- gGCGGCGaggucaGGCGACGGagcgcccGGGUCCGGAGg -3'
miRNA:   3'- -CGUCGCa-----CCGCUGCCc------CCCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 9465 0.74 0.300958
Target:  5'- gGCGGC-UGGCcguaGGCGGGcGGGCCCGcGAGc -3'
miRNA:   3'- -CGUCGcACCG----CUGCCC-CCCGGGC-UUC- -5'
8974 3' -62.9 NC_002512.2 + 149429 0.74 0.307448
Target:  5'- cGCGGCGggGGCGggcGCGGGGGGagaggaaggggaCCCGGGa -3'
miRNA:   3'- -CGUCGCa-CCGC---UGCCCCCC------------GGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 2296 0.74 0.310075
Target:  5'- cGCuGCG-GGUGGCGGGGcucugcugcgccggcGGUCCGGAGg -3'
miRNA:   3'- -CGuCGCaCCGCUGCCCC---------------CCGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 3062 0.73 0.32756
Target:  5'- gGCGGCGgacgcGGCGGCGGcGGcGGCCaCGgcGg -3'
miRNA:   3'- -CGUCGCa----CCGCUGCC-CC-CCGG-GCuuC- -5'
8974 3' -62.9 NC_002512.2 + 140973 0.73 0.32756
Target:  5'- --cGCGUGGUGAccgaucggauCGGGGGGCaCGggGg -3'
miRNA:   3'- cguCGCACCGCU----------GCCCCCCGgGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 229684 0.73 0.341499
Target:  5'- -gAGCG-GcGCGACGGGGGGCCaGGGc -3'
miRNA:   3'- cgUCGCaC-CGCUGCCCCCCGGgCUUc -5'
8974 3' -62.9 NC_002512.2 + 281 0.73 0.341499
Target:  5'- -gAGCG-GcGCGACGGGGGGCCaGGGc -3'
miRNA:   3'- cgUCGCaC-CGCUGCCCCCCGGgCUUc -5'
8974 3' -62.9 NC_002512.2 + 226707 0.73 0.341499
Target:  5'- gGCGGCGUcGaGCGACGGGaGGCCgCGGGc -3'
miRNA:   3'- -CGUCGCA-C-CGCUGCCCcCCGG-GCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.