Results 1 - 20 of 161 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 133794 | 0.66 | 0.698603 |
Target: 5'- gGCGGCGgGGaCGACGGucgcgccGGGUgCGggGg -3' miRNA: 3'- -CGUCGCaCC-GCUGCCc------CCCGgGCuuC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 229564 | 0.66 | 0.744343 |
Target: 5'- gGCGGCaggaGGCGGCaGaGGaGGCCgGAGGg -3' miRNA: 3'- -CGUCGca--CCGCUGcC-CC-CCGGgCUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 108830 | 0.66 | 0.735334 |
Target: 5'- --cGCGccucgGGCGGCGGGuacccGGCCCaGAGGu -3' miRNA: 3'- cguCGCa----CCGCUGCCCc----CCGGG-CUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 136070 | 0.66 | 0.726248 |
Target: 5'- --uGCGUGGgucCGGcCGGGGGGCCgGc-- -3' miRNA: 3'- cguCGCACC---GCU-GCCCCCCGGgCuuc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 104426 | 0.66 | 0.707876 |
Target: 5'- uCAGCGUcGuCGAUGGGGGGCgaugucuuCCGGu- -3' miRNA: 3'- cGUCGCAcC-GCUGCCCCCCG--------GGCUuc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 80749 | 0.66 | 0.717093 |
Target: 5'- cGCGGCGgucccgGGUccCGGGGguccucgcGGCUCGAGGa -3' miRNA: 3'- -CGUCGCa-----CCGcuGCCCC--------CCGGGCUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 87283 | 0.66 | 0.744343 |
Target: 5'- cGCGGuCGUGGgGugGacGGaGUCCGAGGa -3' miRNA: 3'- -CGUC-GCACCgCugCccCC-CGGGCUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 124762 | 0.66 | 0.70695 |
Target: 5'- uGCGGCGa--CGACGGGugcgagggcugccGGGaCCCGggGa -3' miRNA: 3'- -CGUCGCaccGCUGCCC-------------CCC-GGGCuuC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 45024 | 0.66 | 0.744343 |
Target: 5'- aGCAGCGcacGCuGACGGuGGaCCCGAGGa -3' miRNA: 3'- -CGUCGCac-CG-CUGCCcCCcGGGCUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 80824 | 0.66 | 0.707876 |
Target: 5'- uCGGCGU--CGGCGGaGGGGCCCcguAGg -3' miRNA: 3'- cGUCGCAccGCUGCC-CCCCGGGcu-UC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 170803 | 0.66 | 0.744343 |
Target: 5'- gGCGGCGagggGaGCGACGGGGGcgGCagCGgcGg -3' miRNA: 3'- -CGUCGCa---C-CGCUGCCCCC--CGg-GCuuC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 129863 | 0.66 | 0.744343 |
Target: 5'- -aGGCGgaggacGGCGGCGGGGGauucgccgucGCCCu--- -3' miRNA: 3'- cgUCGCa-----CCGCUGCCCCC----------CGGGcuuc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 120213 | 0.66 | 0.747924 |
Target: 5'- aCAGCcuggacguggaacugGUGGCGACGGGccugucguggaGGGCCUa--- -3' miRNA: 3'- cGUCG---------------CACCGCUGCCC-----------CCCGGGcuuc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 161 | 0.66 | 0.744343 |
Target: 5'- gGCGGCaggaGGCGGCaGaGGaGGCCgGAGGg -3' miRNA: 3'- -CGUCGca--CCGCUGcC-CC-CCGGgCUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 74644 | 0.66 | 0.735334 |
Target: 5'- aCGGCccgGGgGAgauCGGGGGaGCUCGggGg -3' miRNA: 3'- cGUCGca-CCgCU---GCCCCC-CGGGCuuC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 97379 | 0.66 | 0.707876 |
Target: 5'- cGCGGCGgccGGaGACGGGggcGGGCgCGAc- -3' miRNA: 3'- -CGUCGCa--CCgCUGCCC---CCCGgGCUuc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 4877 | 0.66 | 0.747924 |
Target: 5'- uGCGGCGccggcuggaggagcGGCGACGGGaagaGGGCgCCGc-- -3' miRNA: 3'- -CGUCGCa-------------CCGCUGCCC----CCCG-GGCuuc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 11719 | 0.66 | 0.735334 |
Target: 5'- cCGGCGUaccgaGGCuACGGGGacgaGGCCgGGAGc -3' miRNA: 3'- cGUCGCA-----CCGcUGCCCC----CCGGgCUUC- -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 106692 | 0.66 | 0.707876 |
Target: 5'- cGCGGUGUucGGCGAUGGGGcucUCCGGGa -3' miRNA: 3'- -CGUCGCA--CCGCUGCCCCcc-GGGCUUc -5' |
|||||||
8974 | 3' | -62.9 | NC_002512.2 | + | 17848 | 0.66 | 0.707876 |
Target: 5'- aGCAGCuccucccgGGCG-CGGuGcucgcgcaGGGCCCGggGg -3' miRNA: 3'- -CGUCGca------CCGCuGCC-C--------CCCGGGCuuC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home