Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8974 | 5' | -55.4 | NC_002512.2 | + | 169053 | 0.68 | 0.92385 |
Target: 5'- aUCUccUCGGGCG-CGAGGggcuCCGcGGCg -3' miRNA: 3'- aAGA--AGCCUGCaGCUCCagu-GGU-CCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 123736 | 0.68 | 0.918409 |
Target: 5'- ---cUCGGACcugCGGGGUCggACCuGGCg -3' miRNA: 3'- aagaAGCCUGca-GCUCCAG--UGGuCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 189254 | 0.68 | 0.918409 |
Target: 5'- gUCaccgUCGGggagagguACGUCGAGGUCcgGCCucgcGGCg -3' miRNA: 3'- aAGa---AGCC--------UGCAGCUCCAG--UGGu---CCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 224622 | 0.68 | 0.900729 |
Target: 5'- ----cCGGGC-UCGGGGUCGCCGccgcGGCc -3' miRNA: 3'- aagaaGCCUGcAGCUCCAGUGGU----CCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 92727 | 0.68 | 0.900729 |
Target: 5'- aUCa--GGGCGUCGAuguucgucauGGagGCCAGGCu -3' miRNA: 3'- aAGaagCCUGCAGCU----------CCagUGGUCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 77554 | 0.69 | 0.89439 |
Target: 5'- gUCg-CGGACGgCG-GGUCGCCcacGGGCg -3' miRNA: 3'- aAGaaGCCUGCaGCuCCAGUGG---UCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 224205 | 0.69 | 0.89439 |
Target: 5'- ----aCGGACG-CGGGGaCGCCGGGg -3' miRNA: 3'- aagaaGCCUGCaGCUCCaGUGGUCCg -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 160333 | 0.69 | 0.89439 |
Target: 5'- aUCgugCGGcACGUCGGGGUgACgaugAGGCa -3' miRNA: 3'- aAGaa-GCC-UGCAGCUCCAgUGg---UCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 113506 | 0.69 | 0.887832 |
Target: 5'- -gCUggCGGAagaaGUUGuugacgcagcGGGUCACCAGGCc -3' miRNA: 3'- aaGAa-GCCUg---CAGC----------UCCAGUGGUCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 123557 | 0.69 | 0.874074 |
Target: 5'- ----gCGGACGUCGAGGgggagagCGaCGGGCu -3' miRNA: 3'- aagaaGCCUGCAGCUCCa------GUgGUCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 206861 | 0.69 | 0.869784 |
Target: 5'- cUUCUUCGGgggcgGCGcCGAgcucgccgacggguaGGUCACCAGcGCc -3' miRNA: 3'- -AAGAAGCC-----UGCaGCU---------------CCAGUGGUC-CG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 95886 | 0.69 | 0.866883 |
Target: 5'- -----aGGAUcUCGAGGUCGCCcGGCc -3' miRNA: 3'- aagaagCCUGcAGCUCCAGUGGuCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 199509 | 0.69 | 0.866883 |
Target: 5'- -----aGGAUcagGUCGAGGUCGUCGGGCg -3' miRNA: 3'- aagaagCCUG---CAGCUCCAGUGGUCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 170851 | 0.69 | 0.866883 |
Target: 5'- ----cCGGACGUCGAGuGUCGCCucgacGCc -3' miRNA: 3'- aagaaGCCUGCAGCUC-CAGUGGuc---CG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 225398 | 0.69 | 0.866883 |
Target: 5'- cUCUUCGGggacgGCGcCGGGGUCGgggUCGGGUu -3' miRNA: 3'- aAGAAGCC-----UGCaGCUCCAGU---GGUCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 87838 | 0.69 | 0.866883 |
Target: 5'- ----cCGGGCGUCGggcccucgcggcGGGUCGCC-GGCc -3' miRNA: 3'- aagaaGCCUGCAGC------------UCCAGUGGuCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 12393 | 0.7 | 0.859492 |
Target: 5'- -cCUUCGGGCGgcggCGGcGG-CGCCGGGa -3' miRNA: 3'- aaGAAGCCUGCa---GCU-CCaGUGGUCCg -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 97225 | 0.7 | 0.859492 |
Target: 5'- -----gGGACGUCGAGG-CGCUGGGa -3' miRNA: 3'- aagaagCCUGCAGCUCCaGUGGUCCg -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 159357 | 0.7 | 0.859492 |
Target: 5'- ---aUCGG-CGUCGGGGUCG--GGGCg -3' miRNA: 3'- aagaAGCCuGCAGCUCCAGUggUCCG- -5' |
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8974 | 5' | -55.4 | NC_002512.2 | + | 218851 | 0.7 | 0.851904 |
Target: 5'- -aCUUCGc-CGaCGAGGUCGCCcgGGGCa -3' miRNA: 3'- aaGAAGCcuGCaGCUCCAGUGG--UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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