miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 174318 0.66 0.955594
Target:  5'- -----gGGACGU--GGGUCAgCAGGCg -3'
miRNA:   3'- aagaagCCUGCAgcUCCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 30979 0.67 0.951728
Target:  5'- -----aGGACGUCGAGG--ACguGGCg -3'
miRNA:   3'- aagaagCCUGCAGCUCCagUGguCCG- -5'
8974 5' -55.4 NC_002512.2 + 11367 0.67 0.951728
Target:  5'- gUUCgcgUCGGACGaCGAGGgguCCGacGGCu -3'
miRNA:   3'- -AAGa--AGCCUGCaGCUCCaguGGU--CCG- -5'
8974 5' -55.4 NC_002512.2 + 183007 0.67 0.95133
Target:  5'- -aCggCGGAUGcgcggCGAGGUCACCGucugcaguugcacGGCc -3'
miRNA:   3'- aaGaaGCCUGCa----GCUCCAGUGGU-------------CCG- -5'
8974 5' -55.4 NC_002512.2 + 179526 0.67 0.947644
Target:  5'- cUCUUCGGuCGUCGGcucGGUCuuC-GGCu -3'
miRNA:   3'- aAGAAGCCuGCAGCU---CCAGugGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 4067 0.67 0.947644
Target:  5'- ----cCGcGGC-UCGAGGUC-CCAGGCc -3'
miRNA:   3'- aagaaGC-CUGcAGCUCCAGuGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 20778 0.67 0.943337
Target:  5'- ----cCGGACGUCG-GGaCACgGGGUg -3'
miRNA:   3'- aagaaGCCUGCAGCuCCaGUGgUCCG- -5'
8974 5' -55.4 NC_002512.2 + 170707 0.67 0.943337
Target:  5'- aUCUgc-GAgGcCGGGGUCACgAGGCa -3'
miRNA:   3'- aAGAagcCUgCaGCUCCAGUGgUCCG- -5'
8974 5' -55.4 NC_002512.2 + 165570 0.67 0.943337
Target:  5'- ---gUCGG-CGaCGuGGUgGCCGGGCa -3'
miRNA:   3'- aagaAGCCuGCaGCuCCAgUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 109843 0.67 0.938806
Target:  5'- ----cCGGGCGUCGGGGaCcgGCguGGCg -3'
miRNA:   3'- aagaaGCCUGCAGCUCCaG--UGguCCG- -5'
8974 5' -55.4 NC_002512.2 + 114778 0.67 0.93834
Target:  5'- cUCUgCGcGAUGUUGgcccgcugcacgcGGGUgGCCAGGCg -3'
miRNA:   3'- aAGAaGC-CUGCAGC-------------UCCAgUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 114644 0.67 0.934048
Target:  5'- aUCguguaGGugGUCG-GGUCGuCCAGGa -3'
miRNA:   3'- aAGaag--CCugCAGCuCCAGU-GGUCCg -5'
8974 5' -55.4 NC_002512.2 + 182370 0.67 0.934048
Target:  5'- aUCUcgUGGAUGUCGGuGGUCugCGuccuGGCc -3'
miRNA:   3'- aAGAa-GCCUGCAGCU-CCAGugGU----CCG- -5'
8974 5' -55.4 NC_002512.2 + 122775 0.67 0.934048
Target:  5'- ---aUCGGGuCGUcuccccCGAGGgCGCCGGGCc -3'
miRNA:   3'- aagaAGCCU-GCA------GCUCCaGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 126093 0.67 0.934048
Target:  5'- ---cUCGGACGUgaucacCGAGGUCgGCCGGuGUc -3'
miRNA:   3'- aagaAGCCUGCA------GCUCCAG-UGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 4616 0.67 0.934048
Target:  5'- ----aCGGACGcCGAGGaCGCCcuccuGGCg -3'
miRNA:   3'- aagaaGCCUGCaGCUCCaGUGGu----CCG- -5'
8974 5' -55.4 NC_002512.2 + 36383 0.67 0.934048
Target:  5'- ----cCGuGACGUuggcgcgacCGAGGUCGuCCAGGCc -3'
miRNA:   3'- aagaaGC-CUGCA---------GCUCCAGU-GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 118556 0.68 0.929063
Target:  5'- gUCgcgUCGGACGUCGGGagcGUCGaaAGGg -3'
miRNA:   3'- aAGa--AGCCUGCAGCUC---CAGUggUCCg -5'
8974 5' -55.4 NC_002512.2 + 6377 0.68 0.929063
Target:  5'- uUUUUUCGGACuUCGAggcgGGUUAaCGGGCa -3'
miRNA:   3'- -AAGAAGCCUGcAGCU----CCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 52819 0.68 0.92385
Target:  5'- ----aCGGACG-CG-GGUCACC-GGCu -3'
miRNA:   3'- aagaaGCCUGCaGCuCCAGUGGuCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.