miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 8176 0.7 0.836165
Target:  5'- aUC-UCGG-CGUagcacccgaggcCGAGcGUCGCCGGGCg -3'
miRNA:   3'- aAGaAGCCuGCA------------GCUC-CAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 94898 0.7 0.844126
Target:  5'- ----aCGGguagGCGUCccGGUCGCCGGGCa -3'
miRNA:   3'- aagaaGCC----UGCAGcuCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 218851 0.7 0.851904
Target:  5'- -aCUUCGc-CGaCGAGGUCGCCcgGGGCa -3'
miRNA:   3'- aaGAAGCcuGCaGCUCCAGUGG--UCCG- -5'
8974 5' -55.4 NC_002512.2 + 12393 0.7 0.859492
Target:  5'- -cCUUCGGGCGgcggCGGcGG-CGCCGGGa -3'
miRNA:   3'- aaGAAGCCUGCa---GCU-CCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 159357 0.7 0.859492
Target:  5'- ---aUCGG-CGUCGGGGUCG--GGGCg -3'
miRNA:   3'- aagaAGCCuGCAGCUCCAGUggUCCG- -5'
8974 5' -55.4 NC_002512.2 + 97225 0.7 0.859492
Target:  5'- -----gGGACGUCGAGG-CGCUGGGa -3'
miRNA:   3'- aagaagCCUGCAGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 199509 0.69 0.866883
Target:  5'- -----aGGAUcagGUCGAGGUCGUCGGGCg -3'
miRNA:   3'- aagaagCCUG---CAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 170851 0.69 0.866883
Target:  5'- ----cCGGACGUCGAGuGUCGCCucgacGCc -3'
miRNA:   3'- aagaaGCCUGCAGCUC-CAGUGGuc---CG- -5'
8974 5' -55.4 NC_002512.2 + 95886 0.69 0.866883
Target:  5'- -----aGGAUcUCGAGGUCGCCcGGCc -3'
miRNA:   3'- aagaagCCUGcAGCUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 87838 0.69 0.866883
Target:  5'- ----cCGGGCGUCGggcccucgcggcGGGUCGCC-GGCc -3'
miRNA:   3'- aagaaGCCUGCAGC------------UCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 225398 0.69 0.866883
Target:  5'- cUCUUCGGggacgGCGcCGGGGUCGgggUCGGGUu -3'
miRNA:   3'- aAGAAGCC-----UGCaGCUCCAGU---GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 206861 0.69 0.869784
Target:  5'- cUUCUUCGGgggcgGCGcCGAgcucgccgacggguaGGUCACCAGcGCc -3'
miRNA:   3'- -AAGAAGCC-----UGCaGCU---------------CCAGUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 123557 0.69 0.874074
Target:  5'- ----gCGGACGUCGAGGgggagagCGaCGGGCu -3'
miRNA:   3'- aagaaGCCUGCAGCUCCa------GUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 113506 0.69 0.887832
Target:  5'- -gCUggCGGAagaaGUUGuugacgcagcGGGUCACCAGGCc -3'
miRNA:   3'- aaGAa-GCCUg---CAGC----------UCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 224205 0.69 0.89439
Target:  5'- ----aCGGACG-CGGGGaCGCCGGGg -3'
miRNA:   3'- aagaaGCCUGCaGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 77554 0.69 0.89439
Target:  5'- gUCg-CGGACGgCG-GGUCGCCcacGGGCg -3'
miRNA:   3'- aAGaaGCCUGCaGCuCCAGUGG---UCCG- -5'
8974 5' -55.4 NC_002512.2 + 160333 0.69 0.89439
Target:  5'- aUCgugCGGcACGUCGGGGUgACgaugAGGCa -3'
miRNA:   3'- aAGaa-GCC-UGCAGCUCCAgUGg---UCCG- -5'
8974 5' -55.4 NC_002512.2 + 224622 0.68 0.900729
Target:  5'- ----cCGGGC-UCGGGGUCGCCGccgcGGCc -3'
miRNA:   3'- aagaaGCCUGcAGCUCCAGUGGU----CCG- -5'
8974 5' -55.4 NC_002512.2 + 92727 0.68 0.900729
Target:  5'- aUCa--GGGCGUCGAuguucgucauGGagGCCAGGCu -3'
miRNA:   3'- aAGaagCCUGCAGCU----------CCagUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 189254 0.68 0.918409
Target:  5'- gUCaccgUCGGggagagguACGUCGAGGUCcgGCCucgcGGCg -3'
miRNA:   3'- aAGa---AGCC--------UGCAGCUCCAG--UGGu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.