miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 198703 1.1 0.004458
Target:  5'- gUUCUUCGGACGUCGAGGUCACCAGGCg -3'
miRNA:   3'- -AAGAAGCCUGCAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 89429 0.76 0.521952
Target:  5'- ---cUCGGGCGUCGgcgGGGUCAcguCCGGGCc -3'
miRNA:   3'- aagaAGCCUGCAGC---UCCAGU---GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 146828 0.76 0.521952
Target:  5'- -cCUUCGcGCG-CGAGGUCGCCuGGCc -3'
miRNA:   3'- aaGAAGCcUGCaGCUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 182001 0.75 0.570623
Target:  5'- ----gCGGACGuccUCGGGGUCAggcCCAGGCg -3'
miRNA:   3'- aagaaGCCUGC---AGCUCCAGU---GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 83122 0.74 0.659264
Target:  5'- gUCggUCGGGucgucguccccguCGUCGAGGUCGUCGGGCc -3'
miRNA:   3'- aAGa-AGCCU-------------GCAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 56380 0.73 0.670212
Target:  5'- aUCggCGGACGgcggggCGAGGUCGagaCAGGUc -3'
miRNA:   3'- aAGaaGCCUGCa-----GCUCCAGUg--GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 225561 0.72 0.729013
Target:  5'- cUUCUUCGGcgACGaggccgaccUCGAGGggCGCCGGGUc -3'
miRNA:   3'- -AAGAAGCC--UGC---------AGCUCCa-GUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 135632 0.72 0.748066
Target:  5'- gUUC-UCGGGgGUCcGGGUCGCC-GGCg -3'
miRNA:   3'- -AAGaAGCCUgCAGcUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 128413 0.72 0.76673
Target:  5'- ----cCGGugG-CGGGGUCGCCGGaGCc -3'
miRNA:   3'- aagaaGCCugCaGCUCCAGUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 185849 0.72 0.76673
Target:  5'- cUUCUgggagCGGuACGUCGAGGagggCGCCucGGGCc -3'
miRNA:   3'- -AAGAa----GCC-UGCAGCUCCa---GUGG--UCCG- -5'
8974 5' -55.4 NC_002512.2 + 89066 0.72 0.76673
Target:  5'- ---aUCGGACGUCGGucuGUCugCGGGUu -3'
miRNA:   3'- aagaAGCCUGCAGCUc--CAGugGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 152839 0.72 0.76673
Target:  5'- ---aUCGGGCcUCGcGGUCcCCAGGCg -3'
miRNA:   3'- aagaAGCCUGcAGCuCCAGuGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 131017 0.71 0.79385
Target:  5'- gUCUUCgacgcgcucgaGGGCGUCGGGGcCGCgGGGg -3'
miRNA:   3'- aAGAAG-----------CCUGCAGCUCCaGUGgUCCg -5'
8974 5' -55.4 NC_002512.2 + 218105 0.71 0.811248
Target:  5'- ----gCGGGCGUCGcgcccgGGGUCGCuCGGGUa -3'
miRNA:   3'- aagaaGCCUGCAGC------UCCAGUG-GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 109763 0.71 0.811248
Target:  5'- cUCUUCuGGAUccauagcgGUCGAGG-CGCaCGGGCg -3'
miRNA:   3'- aAGAAG-CCUG--------CAGCUCCaGUG-GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 86359 0.7 0.819719
Target:  5'- ----aCGG-CGaCGAGGcCGCCAGGCg -3'
miRNA:   3'- aagaaGCCuGCaGCUCCaGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 124355 0.7 0.827203
Target:  5'- aUCUUCgacccccGGGCGcCGGGGUCcaGCCAGaGCc -3'
miRNA:   3'- aAGAAG-------CCUGCaGCUCCAG--UGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 76070 0.7 0.828027
Target:  5'- gUUCUUCGGACGacgaCGAGGa-ACC-GGCg -3'
miRNA:   3'- -AAGAAGCCUGCa---GCUCCagUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 46178 0.7 0.828027
Target:  5'- aUCUccUCGGAggucucccCGUCGAGGU--CCAGGUa -3'
miRNA:   3'- aAGA--AGCCU--------GCAGCUCCAguGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 157063 0.7 0.836165
Target:  5'- ----gCGGGCGUcccggggucCGGGGUCGCCGGcGCc -3'
miRNA:   3'- aagaaGCCUGCA---------GCUCCAGUGGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.