miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 4067 0.67 0.947644
Target:  5'- ----cCGcGGC-UCGAGGUC-CCAGGCc -3'
miRNA:   3'- aagaaGC-CUGcAGCUCCAGuGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 4616 0.67 0.934048
Target:  5'- ----aCGGACGcCGAGGaCGCCcuccuGGCg -3'
miRNA:   3'- aagaaGCCUGCaGCUCCaGUGGu----CCG- -5'
8974 5' -55.4 NC_002512.2 + 6377 0.68 0.929063
Target:  5'- uUUUUUCGGACuUCGAggcgGGUUAaCGGGCa -3'
miRNA:   3'- -AAGAAGCCUGcAGCU----CCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 7271 0.66 0.962682
Target:  5'- gUCgggaUCGGGCG-CGAGGcC-CCGGGg -3'
miRNA:   3'- aAGa---AGCCUGCaGCUCCaGuGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 8176 0.7 0.836165
Target:  5'- aUC-UCGG-CGUagcacccgaggcCGAGcGUCGCCGGGCg -3'
miRNA:   3'- aAGaAGCCuGCA------------GCUC-CAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 11367 0.67 0.951728
Target:  5'- gUUCgcgUCGGACGaCGAGGgguCCGacGGCu -3'
miRNA:   3'- -AAGa--AGCCUGCaGCUCCaguGGU--CCG- -5'
8974 5' -55.4 NC_002512.2 + 12393 0.7 0.859492
Target:  5'- -cCUUCGGGCGgcggCGGcGG-CGCCGGGa -3'
miRNA:   3'- aaGAAGCCUGCa---GCU-CCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 20778 0.67 0.943337
Target:  5'- ----cCGGACGUCG-GGaCACgGGGUg -3'
miRNA:   3'- aagaaGCCUGCAGCuCCaGUGgUCCG- -5'
8974 5' -55.4 NC_002512.2 + 30979 0.67 0.951728
Target:  5'- -----aGGACGUCGAGG--ACguGGCg -3'
miRNA:   3'- aagaagCCUGCAGCUCCagUGguCCG- -5'
8974 5' -55.4 NC_002512.2 + 31707 0.66 0.965912
Target:  5'- cUgUUCGccGACGUgGAGGUCcGCCGgccGGCg -3'
miRNA:   3'- aAgAAGC--CUGCAgCUCCAG-UGGU---CCG- -5'
8974 5' -55.4 NC_002512.2 + 36383 0.67 0.934048
Target:  5'- ----cCGuGACGUuggcgcgacCGAGGUCGuCCAGGCc -3'
miRNA:   3'- aagaaGC-CUGCA---------GCUCCAGU-GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 46178 0.7 0.828027
Target:  5'- aUCUccUCGGAggucucccCGUCGAGGU--CCAGGUa -3'
miRNA:   3'- aAGA--AGCCU--------GCAGCUCCAguGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 52819 0.68 0.92385
Target:  5'- ----aCGGACG-CG-GGUCACC-GGCu -3'
miRNA:   3'- aagaaGCCUGCaGCuCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 56380 0.73 0.670212
Target:  5'- aUCggCGGACGgcggggCGAGGUCGagaCAGGUc -3'
miRNA:   3'- aAGaaGCCUGCa-----GCUCCAGUg--GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 73618 0.66 0.965912
Target:  5'- ---cUCGGAgaaGUCGaAGGcgcCGCCGGGCu -3'
miRNA:   3'- aagaAGCCUg--CAGC-UCCa--GUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 76070 0.7 0.828027
Target:  5'- gUUCUUCGGACGacgaCGAGGa-ACC-GGCg -3'
miRNA:   3'- -AAGAAGCCUGCa---GCUCCagUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 77554 0.69 0.89439
Target:  5'- gUCg-CGGACGgCG-GGUCGCCcacGGGCg -3'
miRNA:   3'- aAGaaGCCUGCaGCuCCAGUGG---UCCG- -5'
8974 5' -55.4 NC_002512.2 + 83122 0.74 0.659264
Target:  5'- gUCggUCGGGucgucguccccguCGUCGAGGUCGUCGGGCc -3'
miRNA:   3'- aAGa-AGCCU-------------GCAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 86359 0.7 0.819719
Target:  5'- ----aCGG-CGaCGAGGcCGCCAGGCg -3'
miRNA:   3'- aagaaGCCuGCaGCUCCaGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 87838 0.69 0.866883
Target:  5'- ----cCGGGCGUCGggcccucgcggcGGGUCGCC-GGCc -3'
miRNA:   3'- aagaaGCCUGCAGC------------UCCAGUGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.