miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 225561 0.72 0.729013
Target:  5'- cUUCUUCGGcgACGaggccgaccUCGAGGggCGCCGGGUc -3'
miRNA:   3'- -AAGAAGCC--UGC---------AGCUCCa-GUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 225398 0.69 0.866883
Target:  5'- cUCUUCGGggacgGCGcCGGGGUCGgggUCGGGUu -3'
miRNA:   3'- aAGAAGCC-----UGCaGCUCCAGU---GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 224622 0.68 0.900729
Target:  5'- ----cCGGGC-UCGGGGUCGCCGccgcGGCc -3'
miRNA:   3'- aagaaGCCUGcAGCUCCAGUGGU----CCG- -5'
8974 5' -55.4 NC_002512.2 + 224339 0.66 0.971773
Target:  5'- uUUCcgCGGcgccGCGcCGGGGUCG-CGGGCg -3'
miRNA:   3'- -AAGaaGCC----UGCaGCUCCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 224205 0.69 0.89439
Target:  5'- ----aCGGACG-CGGGGaCGCCGGGg -3'
miRNA:   3'- aagaaGCCUGCaGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 222211 0.66 0.962682
Target:  5'- uUUCUucgUCGGGguggcCGUCGGGGccgcguccuucgUCGCCGuGGCg -3'
miRNA:   3'- -AAGA---AGCCU-----GCAGCUCC------------AGUGGU-CCG- -5'
8974 5' -55.4 NC_002512.2 + 218851 0.7 0.851904
Target:  5'- -aCUUCGc-CGaCGAGGUCGCCcgGGGCa -3'
miRNA:   3'- aaGAAGCcuGCaGCUCCAGUGG--UCCG- -5'
8974 5' -55.4 NC_002512.2 + 218105 0.71 0.811248
Target:  5'- ----gCGGGCGUCGcgcccgGGGUCGCuCGGGUa -3'
miRNA:   3'- aagaaGCCUGCAGC------UCCAGUG-GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 206861 0.69 0.869784
Target:  5'- cUUCUUCGGgggcgGCGcCGAgcucgccgacggguaGGUCACCAGcGCc -3'
miRNA:   3'- -AAGAAGCC-----UGCaGCU---------------CCAGUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 199509 0.69 0.866883
Target:  5'- -----aGGAUcagGUCGAGGUCGUCGGGCg -3'
miRNA:   3'- aagaagCCUG---CAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 198703 1.1 0.004458
Target:  5'- gUUCUUCGGACGUCGAGGUCACCAGGCg -3'
miRNA:   3'- -AAGAAGCCUGCAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 189254 0.68 0.918409
Target:  5'- gUCaccgUCGGggagagguACGUCGAGGUCcgGCCucgcGGCg -3'
miRNA:   3'- aAGa---AGCC--------UGCAGCUCCAG--UGGu---CCG- -5'
8974 5' -55.4 NC_002512.2 + 185849 0.72 0.76673
Target:  5'- cUUCUgggagCGGuACGUCGAGGagggCGCCucGGGCc -3'
miRNA:   3'- -AAGAa----GCC-UGCAGCUCCa---GUGG--UCCG- -5'
8974 5' -55.4 NC_002512.2 + 183007 0.67 0.95133
Target:  5'- -aCggCGGAUGcgcggCGAGGUCACCGucugcaguugcacGGCc -3'
miRNA:   3'- aaGaaGCCUGCa----GCUCCAGUGGU-------------CCG- -5'
8974 5' -55.4 NC_002512.2 + 182370 0.67 0.934048
Target:  5'- aUCUcgUGGAUGUCGGuGGUCugCGuccuGGCc -3'
miRNA:   3'- aAGAa-GCCUGCAGCU-CCAGugGU----CCG- -5'
8974 5' -55.4 NC_002512.2 + 182001 0.75 0.570623
Target:  5'- ----gCGGACGuccUCGGGGUCAggcCCAGGCg -3'
miRNA:   3'- aagaaGCCUGC---AGCUCCAGU---GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 179526 0.67 0.947644
Target:  5'- cUCUUCGGuCGUCGGcucGGUCuuC-GGCu -3'
miRNA:   3'- aAGAAGCCuGCAGCU---CCAGugGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 174318 0.66 0.955594
Target:  5'- -----gGGACGU--GGGUCAgCAGGCg -3'
miRNA:   3'- aagaagCCUGCAgcUCCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 170851 0.69 0.866883
Target:  5'- ----cCGGACGUCGAGuGUCGCCucgacGCc -3'
miRNA:   3'- aagaaGCCUGCAGCUC-CAGUGGuc---CG- -5'
8974 5' -55.4 NC_002512.2 + 170707 0.67 0.943337
Target:  5'- aUCUgc-GAgGcCGGGGUCACgAGGCa -3'
miRNA:   3'- aAGAagcCUgCaGCUCCAGUGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.