miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 114644 0.67 0.934048
Target:  5'- aUCguguaGGugGUCG-GGUCGuCCAGGa -3'
miRNA:   3'- aAGaag--CCugCAGCuCCAGU-GGUCCg -5'
8974 5' -55.4 NC_002512.2 + 113506 0.69 0.887832
Target:  5'- -gCUggCGGAagaaGUUGuugacgcagcGGGUCACCAGGCc -3'
miRNA:   3'- aaGAa-GCCUg---CAGC----------UCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 92727 0.68 0.900729
Target:  5'- aUCa--GGGCGUCGAuguucgucauGGagGCCAGGCu -3'
miRNA:   3'- aAGaagCCUGCAGCU----------CCagUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 123736 0.68 0.918409
Target:  5'- ---cUCGGACcugCGGGGUCggACCuGGCg -3'
miRNA:   3'- aagaAGCCUGca-GCUCCAG--UGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 52819 0.68 0.92385
Target:  5'- ----aCGGACG-CG-GGUCACC-GGCu -3'
miRNA:   3'- aagaaGCCUGCaGCuCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 126093 0.67 0.934048
Target:  5'- ---cUCGGACGUgaucacCGAGGUCgGCCGGuGUc -3'
miRNA:   3'- aagaAGCCUGCA------GCUCCAG-UGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 4616 0.67 0.934048
Target:  5'- ----aCGGACGcCGAGGaCGCCcuccuGGCg -3'
miRNA:   3'- aagaaGCCUGCaGCUCCaGUGGu----CCG- -5'
8974 5' -55.4 NC_002512.2 + 36383 0.67 0.934048
Target:  5'- ----cCGuGACGUuggcgcgacCGAGGUCGuCCAGGCc -3'
miRNA:   3'- aagaaGC-CUGCA---------GCUCCAGU-GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 122775 0.67 0.934048
Target:  5'- ---aUCGGGuCGUcuccccCGAGGgCGCCGGGCc -3'
miRNA:   3'- aagaAGCCU-GCA------GCUCCaGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 123557 0.69 0.874074
Target:  5'- ----gCGGACGUCGAGGgggagagCGaCGGGCu -3'
miRNA:   3'- aagaaGCCUGCAGCUCCa------GUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 97225 0.7 0.859492
Target:  5'- -----gGGACGUCGAGG-CGCUGGGa -3'
miRNA:   3'- aagaagCCUGCAGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 12393 0.7 0.859492
Target:  5'- -cCUUCGGGCGgcggCGGcGG-CGCCGGGa -3'
miRNA:   3'- aaGAAGCCUGCa---GCU-CCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 56380 0.73 0.670212
Target:  5'- aUCggCGGACGgcggggCGAGGUCGagaCAGGUc -3'
miRNA:   3'- aAGaaGCCUGCa-----GCUCCAGUg--GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 135632 0.72 0.748066
Target:  5'- gUUC-UCGGGgGUCcGGGUCGCC-GGCg -3'
miRNA:   3'- -AAGaAGCCUgCAGcUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 89066 0.72 0.76673
Target:  5'- ---aUCGGACGUCGGucuGUCugCGGGUu -3'
miRNA:   3'- aagaAGCCUGCAGCUc--CAGugGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 131017 0.71 0.79385
Target:  5'- gUCUUCgacgcgcucgaGGGCGUCGGGGcCGCgGGGg -3'
miRNA:   3'- aAGAAG-----------CCUGCAGCUCCaGUGgUCCg -5'
8974 5' -55.4 NC_002512.2 + 109763 0.71 0.811248
Target:  5'- cUCUUCuGGAUccauagcgGUCGAGG-CGCaCGGGCg -3'
miRNA:   3'- aAGAAG-CCUG--------CAGCUCCaGUG-GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 86359 0.7 0.819719
Target:  5'- ----aCGG-CGaCGAGGcCGCCAGGCg -3'
miRNA:   3'- aagaaGCCuGCaGCUCCaGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 46178 0.7 0.828027
Target:  5'- aUCUccUCGGAggucucccCGUCGAGGU--CCAGGUa -3'
miRNA:   3'- aAGA--AGCCU--------GCAGCUCCAguGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 8176 0.7 0.836165
Target:  5'- aUC-UCGG-CGUagcacccgaggcCGAGcGUCGCCGGGCg -3'
miRNA:   3'- aAGaAGCCuGCA------------GCUC-CAGUGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.