miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 224339 0.66 0.971773
Target:  5'- uUUCcgCGGcgccGCGcCGGGGUCG-CGGGCg -3'
miRNA:   3'- -AAGaaGCC----UGCaGCUCCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 109843 0.67 0.938806
Target:  5'- ----cCGGGCGUCGGGGaCcgGCguGGCg -3'
miRNA:   3'- aagaaGCCUGCAGCUCCaG--UGguCCG- -5'
8974 5' -55.4 NC_002512.2 + 118556 0.68 0.929063
Target:  5'- gUCgcgUCGGACGUCGGGagcGUCGaaAGGg -3'
miRNA:   3'- aAGa--AGCCUGCAGCUC---CAGUggUCCg -5'
8974 5' -55.4 NC_002512.2 + 198703 1.1 0.004458
Target:  5'- gUUCUUCGGACGUCGAGGUCACCAGGCg -3'
miRNA:   3'- -AAGAAGCCUGCAGCUCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 93119 0.66 0.968941
Target:  5'- gUUCUUCgugcuGGACGgCGAGGaCGCCaucacggaggugAGGCu -3'
miRNA:   3'- -AAGAAG-----CCUGCaGCUCCaGUGG------------UCCG- -5'
8974 5' -55.4 NC_002512.2 + 169434 0.66 0.968941
Target:  5'- gUCgcgCGGAUGUUGGcGGcgcaCACCGGGUc -3'
miRNA:   3'- aAGaa-GCCUGCAGCU-CCa---GUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 95031 0.66 0.965912
Target:  5'- gUCgccCGaGACGUCGcgcGGGgagCACCAGcGCg -3'
miRNA:   3'- aAGaa-GC-CUGCAGC---UCCa--GUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 222211 0.66 0.962682
Target:  5'- uUUCUucgUCGGGguggcCGUCGGGGccgcguccuucgUCGCCGuGGCg -3'
miRNA:   3'- -AAGA---AGCCU-----GCAGCUCC------------AGUGGU-CCG- -5'
8974 5' -55.4 NC_002512.2 + 174318 0.66 0.955594
Target:  5'- -----gGGACGU--GGGUCAgCAGGCg -3'
miRNA:   3'- aagaagCCUGCAgcUCCAGUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 165570 0.67 0.943337
Target:  5'- ---gUCGG-CGaCGuGGUgGCCGGGCa -3'
miRNA:   3'- aagaAGCCuGCaGCuCCAgUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 183007 0.67 0.95133
Target:  5'- -aCggCGGAUGcgcggCGAGGUCACCGucugcaguugcacGGCc -3'
miRNA:   3'- aaGaaGCCUGCa----GCUCCAGUGGU-------------CCG- -5'
8974 5' -55.4 NC_002512.2 + 166030 0.66 0.962682
Target:  5'- gUUCggCGGcCGUucCGGGGUCAUCAaGGUc -3'
miRNA:   3'- -AAGaaGCCuGCA--GCUCCAGUGGU-CCG- -5'
8974 5' -55.4 NC_002512.2 + 164201 0.66 0.971773
Target:  5'- -aCUUCaugcaGGGCcUCGGGGcCGCCGGGa -3'
miRNA:   3'- aaGAAG-----CCUGcAGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 179526 0.67 0.947644
Target:  5'- cUCUUCGGuCGUCGGcucGGUCuuC-GGCu -3'
miRNA:   3'- aAGAAGCCuGCAGCU---CCAGugGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 102518 0.66 0.971773
Target:  5'- -----aGGACGagGAGGagGCCAGGg -3'
miRNA:   3'- aagaagCCUGCagCUCCagUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 154404 0.66 0.962682
Target:  5'- ---gUCGGagGCGaUCGGGGUC-CgAGGCa -3'
miRNA:   3'- aagaAGCC--UGC-AGCUCCAGuGgUCCG- -5'
8974 5' -55.4 NC_002512.2 + 170707 0.67 0.943337
Target:  5'- aUCUgc-GAgGcCGGGGUCACgAGGCa -3'
miRNA:   3'- aAGAagcCUgCaGCUCCAGUGgUCCG- -5'
8974 5' -55.4 NC_002512.2 + 182370 0.67 0.934048
Target:  5'- aUCUcgUGGAUGUCGGuGGUCugCGuccuGGCc -3'
miRNA:   3'- aAGAa-GCCUGCAGCU-CCAGugGU----CCG- -5'
8974 5' -55.4 NC_002512.2 + 158647 0.66 0.968941
Target:  5'- -cCUUCGaccccGACGUCGAGGccacggucaUCGCCGGa- -3'
miRNA:   3'- aaGAAGC-----CUGCAGCUCC---------AGUGGUCcg -5'
8974 5' -55.4 NC_002512.2 + 163290 0.66 0.968647
Target:  5'- ----aUGGcaACGUCGAGGUCuACCAgaccagcGGCg -3'
miRNA:   3'- aagaaGCC--UGCAGCUCCAG-UGGU-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.