miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 89066 0.72 0.76673
Target:  5'- ---aUCGGACGUCGGucuGUCugCGGGUu -3'
miRNA:   3'- aagaAGCCUGCAGCUc--CAGugGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 89429 0.76 0.521952
Target:  5'- ---cUCGGGCGUCGgcgGGGUCAcguCCGGGCc -3'
miRNA:   3'- aagaAGCCUGCAGC---UCCAGU---GGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 92727 0.68 0.900729
Target:  5'- aUCa--GGGCGUCGAuguucgucauGGagGCCAGGCu -3'
miRNA:   3'- aAGaagCCUGCAGCU----------CCagUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 93119 0.66 0.968941
Target:  5'- gUUCUUCgugcuGGACGgCGAGGaCGCCaucacggaggugAGGCu -3'
miRNA:   3'- -AAGAAG-----CCUGCaGCUCCaGUGG------------UCCG- -5'
8974 5' -55.4 NC_002512.2 + 94898 0.7 0.844126
Target:  5'- ----aCGGguagGCGUCccGGUCGCCGGGCa -3'
miRNA:   3'- aagaaGCC----UGCAGcuCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 95031 0.66 0.965912
Target:  5'- gUCgccCGaGACGUCGcgcGGGgagCACCAGcGCg -3'
miRNA:   3'- aAGaa-GC-CUGCAGC---UCCa--GUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 95886 0.69 0.866883
Target:  5'- -----aGGAUcUCGAGGUCGCCcGGCc -3'
miRNA:   3'- aagaagCCUGcAGCUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 97225 0.7 0.859492
Target:  5'- -----gGGACGUCGAGG-CGCUGGGa -3'
miRNA:   3'- aagaagCCUGCAGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 99901 0.66 0.955594
Target:  5'- ----gCGGccCGUCGAGGgCGCCGGGg -3'
miRNA:   3'- aagaaGCCu-GCAGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 102518 0.66 0.971773
Target:  5'- -----aGGACGagGAGGagGCCAGGg -3'
miRNA:   3'- aagaagCCUGCagCUCCagUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 109763 0.71 0.811248
Target:  5'- cUCUUCuGGAUccauagcgGUCGAGG-CGCaCGGGCg -3'
miRNA:   3'- aAGAAG-CCUG--------CAGCUCCaGUG-GUCCG- -5'
8974 5' -55.4 NC_002512.2 + 109843 0.67 0.938806
Target:  5'- ----cCGGGCGUCGGGGaCcgGCguGGCg -3'
miRNA:   3'- aagaaGCCUGCAGCUCCaG--UGguCCG- -5'
8974 5' -55.4 NC_002512.2 + 113506 0.69 0.887832
Target:  5'- -gCUggCGGAagaaGUUGuugacgcagcGGGUCACCAGGCc -3'
miRNA:   3'- aaGAa-GCCUg---CAGC----------UCCAGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 114644 0.67 0.934048
Target:  5'- aUCguguaGGugGUCG-GGUCGuCCAGGa -3'
miRNA:   3'- aAGaag--CCugCAGCuCCAGU-GGUCCg -5'
8974 5' -55.4 NC_002512.2 + 114778 0.67 0.93834
Target:  5'- cUCUgCGcGAUGUUGgcccgcugcacgcGGGUgGCCAGGCg -3'
miRNA:   3'- aAGAaGC-CUGCAGC-------------UCCAgUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 118556 0.68 0.929063
Target:  5'- gUCgcgUCGGACGUCGGGagcGUCGaaAGGg -3'
miRNA:   3'- aAGa--AGCCUGCAGCUC---CAGUggUCCg -5'
8974 5' -55.4 NC_002512.2 + 122775 0.67 0.934048
Target:  5'- ---aUCGGGuCGUcuccccCGAGGgCGCCGGGCc -3'
miRNA:   3'- aagaAGCCU-GCA------GCUCCaGUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 123557 0.69 0.874074
Target:  5'- ----gCGGACGUCGAGGgggagagCGaCGGGCu -3'
miRNA:   3'- aagaaGCCUGCAGCUCCa------GUgGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 123736 0.68 0.918409
Target:  5'- ---cUCGGACcugCGGGGUCggACCuGGCg -3'
miRNA:   3'- aagaAGCCUGca-GCUCCAG--UGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 124355 0.7 0.827203
Target:  5'- aUCUUCgacccccGGGCGcCGGGGUCcaGCCAGaGCc -3'
miRNA:   3'- aAGAAG-------CCUGCaGCUCCAG--UGGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.