miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 3' -63.5 NC_002512.2 + 174148 0.66 0.696312
Target:  5'- cGCUcGacaCCGUGGUcaCCGCG-UCCCGGGg -3'
miRNA:   3'- -CGGaCg--GGUACCG--GGCGCuGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 95668 0.66 0.696312
Target:  5'- aGCCU-CUCGUGaGCgCGCGuCCgCCGGGc -3'
miRNA:   3'- -CGGAcGGGUAC-CGgGCGCuGG-GGUCC- -5'
8975 3' -63.5 NC_002512.2 + 155662 0.66 0.696312
Target:  5'- gGCCguucGCCCcgcgucgGGaCCGCGGCCCaCGGa -3'
miRNA:   3'- -CGGa---CGGGua-----CCgGGCGCUGGG-GUCc -5'
8975 3' -63.5 NC_002512.2 + 132000 0.66 0.696312
Target:  5'- gGCC-GCCCcgGGCgCCGggggGACCUCGGcGg -3'
miRNA:   3'- -CGGaCGGGuaCCG-GGCg---CUGGGGUC-C- -5'
8975 3' -63.5 NC_002512.2 + 219393 0.66 0.695384
Target:  5'- uGCCUccGCUgGUcGGCCCgccGCGACgcccacgCCCGGGg -3'
miRNA:   3'- -CGGA--CGGgUA-CCGGG---CGCUG-------GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 126750 0.66 0.693525
Target:  5'- uGCCUGCUCuggcugcucuucugcGGCCCGCGcaGCCUguGu -3'
miRNA:   3'- -CGGACGGGua-------------CCGGGCGC--UGGGguCc -5'
8975 3' -63.5 NC_002512.2 + 226358 0.66 0.687007
Target:  5'- cCCggGCUUcgGGcCCCGCGGgCUCGGGu -3'
miRNA:   3'- cGGa-CGGGuaCC-GGGCGCUgGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 146053 0.66 0.687007
Target:  5'- cGCCUGCgacgaCCcgGGCCCG-GACgCCGc- -3'
miRNA:   3'- -CGGACG-----GGuaCCGGGCgCUGgGGUcc -5'
8975 3' -63.5 NC_002512.2 + 214279 0.66 0.687007
Target:  5'- cGCCUGgCC-UGGCCCGagGGCUUCAc- -3'
miRNA:   3'- -CGGACgGGuACCGGGCg-CUGGGGUcc -5'
8975 3' -63.5 NC_002512.2 + 150412 0.66 0.687007
Target:  5'- aCC-GCCCAcgGGCgCGCGgucGCCCCgacGGGa -3'
miRNA:   3'- cGGaCGGGUa-CCGgGCGC---UGGGG---UCC- -5'
8975 3' -63.5 NC_002512.2 + 132672 0.66 0.687007
Target:  5'- cGCCUcgacgucccGCCC--GGCCCGCcGCCgCAGa -3'
miRNA:   3'- -CGGA---------CGGGuaCCGGGCGcUGGgGUCc -5'
8975 3' -63.5 NC_002512.2 + 160483 0.66 0.687007
Target:  5'- cGCaUGUUCGUGGguuccaucUCCGCGGCgCCGGGa -3'
miRNA:   3'- -CGgACGGGUACC--------GGGCGCUGgGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 194840 0.66 0.687007
Target:  5'- -gCUGUCCc-GGCCCGUgcgGACCCCGa- -3'
miRNA:   3'- cgGACGGGuaCCGGGCG---CUGGGGUcc -5'
8975 3' -63.5 NC_002512.2 + 210123 0.66 0.687007
Target:  5'- cCCUGCCC-UGcGCCCGCGAgUUCu-- -3'
miRNA:   3'- cGGACGGGuAC-CGGGCGCUgGGGucc -5'
8975 3' -63.5 NC_002512.2 + 193018 0.66 0.681404
Target:  5'- cCCUGCCCAccUgcaaguacgccuaucGGCCCGaCGuguccCCCCAGu -3'
miRNA:   3'- cGGACGGGU--A---------------CCGGGC-GCu----GGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 220295 0.66 0.681404
Target:  5'- uCCUGCCCGccgagccgccggggGGCCgGgGGCCgggcuCCGGGg -3'
miRNA:   3'- cGGACGGGUa-------------CCGGgCgCUGG-----GGUCC- -5'
8975 3' -63.5 NC_002512.2 + 89890 0.66 0.677663
Target:  5'- cGCCUcgGUCUG-GGUCgGCGACCCCAc- -3'
miRNA:   3'- -CGGA--CGGGUaCCGGgCGCUGGGGUcc -5'
8975 3' -63.5 NC_002512.2 + 133674 0.66 0.677663
Target:  5'- cGCCgcgGCcgCCGUGGCCgaccuCGCGGCCgCCucccGGa -3'
miRNA:   3'- -CGGa--CG--GGUACCGG-----GCGCUGG-GGu---CC- -5'
8975 3' -63.5 NC_002512.2 + 125106 0.66 0.676726
Target:  5'- gGCCUGUCCcgcgcucaagaugAUGGUCaugcagcaCGCGugaaccgcggggGCCCCGGGg -3'
miRNA:   3'- -CGGACGGG-------------UACCGG--------GCGC------------UGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 203947 0.66 0.67204
Target:  5'- gGCC--CUCGUGGCCCGCcggccgacgcacaucGACCUCAuGGa -3'
miRNA:   3'- -CGGacGGGUACCGGGCG---------------CUGGGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.