miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 3' -63.5 NC_002512.2 + 135287 0.73 0.302757
Target:  5'- cGCCUGCUUcgGGCCCcaguucgccuguccgGCGGuCCCCgAGGu -3'
miRNA:   3'- -CGGACGGGuaCCGGG---------------CGCU-GGGG-UCC- -5'
8975 3' -63.5 NC_002512.2 + 149169 0.73 0.305995
Target:  5'- uGCC-GCCCGcgGGCCCGCGcgcccucGCCCCccGGa -3'
miRNA:   3'- -CGGaCGGGUa-CCGGGCGC-------UGGGGu-CC- -5'
8975 3' -63.5 NC_002512.2 + 51316 0.73 0.306646
Target:  5'- gGCCaaUGCCauCAUGGCCUGCGugCCUcugacGGGa -3'
miRNA:   3'- -CGG--ACGG--GUACCGGGCGCugGGG-----UCC- -5'
8975 3' -63.5 NC_002512.2 + 129815 0.73 0.306646
Target:  5'- cGCUccGUCCccGGCCCGCGGCCCCc-- -3'
miRNA:   3'- -CGGa-CGGGuaCCGGGCGCUGGGGucc -5'
8975 3' -63.5 NC_002512.2 + 99351 0.73 0.333547
Target:  5'- cGCCUGUCCGgcaUGuuCCCGCGACCCgAGc -3'
miRNA:   3'- -CGGACGGGU---ACc-GGGCGCUGGGgUCc -5'
8975 3' -63.5 NC_002512.2 + 126390 0.73 0.333547
Target:  5'- cGCgCUGCCCGgcgagcGGUCCGCGGCCgCCGc- -3'
miRNA:   3'- -CG-GACGGGUa-----CCGGGCGCUGG-GGUcc -5'
8975 3' -63.5 NC_002512.2 + 212999 0.72 0.340537
Target:  5'- cGCCgcgGCCgUcgGGCCCGgGGCCCUcucgAGGu -3'
miRNA:   3'- -CGGa--CGG-GuaCCGGGCgCUGGGG----UCC- -5'
8975 3' -63.5 NC_002512.2 + 146733 0.72 0.347632
Target:  5'- gGCCgcgGCCgCcgGGCCCGaCGACCUCGa- -3'
miRNA:   3'- -CGGa--CGG-GuaCCGGGC-GCUGGGGUcc -5'
8975 3' -63.5 NC_002512.2 + 11668 0.72 0.369546
Target:  5'- cGCCgcgGCCCGccgcGGCCCGaggcgggGGCCCgAGGg -3'
miRNA:   3'- -CGGa--CGGGUa---CCGGGCg------CUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 126959 0.72 0.369546
Target:  5'- cGCCUGUuacgaCCuggGGCCCGUGGCCgucgaccgcgCCAGGc -3'
miRNA:   3'- -CGGACG-----GGua-CCGGGCGCUGG----------GGUCC- -5'
8975 3' -63.5 NC_002512.2 + 113696 0.72 0.369546
Target:  5'- cGCCUGCC--UGGCCCGCaGCgCguGGa -3'
miRNA:   3'- -CGGACGGguACCGGGCGcUGgGguCC- -5'
8975 3' -63.5 NC_002512.2 + 227060 0.71 0.384672
Target:  5'- cGCCgucGUCCG-GGCCCGCGcccGCgCCGGGu -3'
miRNA:   3'- -CGGa--CGGGUaCCGGGCGC---UGgGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 179994 0.71 0.384672
Target:  5'- ---aGCgCGUGGCCCGUGAucCCCCAGcGg -3'
miRNA:   3'- cggaCGgGUACCGGGCGCU--GGGGUC-C- -5'
8975 3' -63.5 NC_002512.2 + 135209 0.71 0.384672
Target:  5'- cGCCagcggGCCgGggGGCCCccCGGCCCCGGGc -3'
miRNA:   3'- -CGGa----CGGgUa-CCGGGc-GCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 3562 0.71 0.384672
Target:  5'- cGUCUGCcgucccgagCCAcGGCCCacaGGCCCCGGGg -3'
miRNA:   3'- -CGGACG---------GGUaCCGGGcg-CUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 126512 0.71 0.392387
Target:  5'- cGCgaGCCUcUGGUcggacgacccgaCCGCGGCCCCGGa -3'
miRNA:   3'- -CGgaCGGGuACCG------------GGCGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 202651 0.71 0.392387
Target:  5'- uCCUaGCCC--GGCCCGCucCCUCAGGg -3'
miRNA:   3'- cGGA-CGGGuaCCGGGCGcuGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 127924 0.71 0.392387
Target:  5'- aGCCcGCCgGcgGGCCCGCGgGCCaCCAGc -3'
miRNA:   3'- -CGGaCGGgUa-CCGGGCGC-UGG-GGUCc -5'
8975 3' -63.5 NC_002512.2 + 201856 0.71 0.400202
Target:  5'- aGCUcGCCUggGGCCUGCGGUCCgAGGa -3'
miRNA:   3'- -CGGaCGGGuaCCGGGCGCUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 126742 0.71 0.400202
Target:  5'- cGCgUGCCUcuUGGCCCGagacGCCUCGGGg -3'
miRNA:   3'- -CGgACGGGu-ACCGGGCgc--UGGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.