miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 3' -63.5 NC_002512.2 + 197704 1.11 0.000737
Target:  5'- uGCCUGCCCAUGGCCCGCGACCCCAGGg -3'
miRNA:   3'- -CGGACGGGUACCGGGCGCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 30451 0.81 0.094247
Target:  5'- gGCCUGCCCAUGGCgCCGUacauguucGAggcccugugcaaCCCCAGGg -3'
miRNA:   3'- -CGGACGGGUACCG-GGCG--------CU------------GGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 72748 0.79 0.131854
Target:  5'- cGCCcGCCCcgGGCCCGCcgccGACCCCcgacgccGGGa -3'
miRNA:   3'- -CGGaCGGGuaCCGGGCG----CUGGGG-------UCC- -5'
8975 3' -63.5 NC_002512.2 + 61451 0.79 0.141954
Target:  5'- uCCUGCUgGUGGCCCGgGACCuguaCCGGGu -3'
miRNA:   3'- cGGACGGgUACCGGGCgCUGG----GGUCC- -5'
8975 3' -63.5 NC_002512.2 + 107634 0.79 0.141954
Target:  5'- cGgCUGCCCGUGGUUCGCGugguggcucaGCCUCAGGa -3'
miRNA:   3'- -CgGACGGGUACCGGGCGC----------UGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 223539 0.78 0.159744
Target:  5'- ---cGCCCGcGGCCCGCGGCCCCGc- -3'
miRNA:   3'- cggaCGGGUaCCGGGCGCUGGGGUcc -5'
8975 3' -63.5 NC_002512.2 + 206983 0.77 0.17952
Target:  5'- aGCC-GCCCGggauGCCCGUGGCCCgCGGGg -3'
miRNA:   3'- -CGGaCGGGUac--CGGGCGCUGGG-GUCC- -5'
8975 3' -63.5 NC_002512.2 + 126382 0.77 0.188022
Target:  5'- gGCC-GCCCGggagaGcGCCCGgGGCCCCGGGc -3'
miRNA:   3'- -CGGaCGGGUa----C-CGGGCgCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 220501 0.76 0.196876
Target:  5'- aGCgaGgCCGUGGCCUGCGuCgCCCGGGa -3'
miRNA:   3'- -CGgaCgGGUACCGGGCGCuG-GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 211734 0.76 0.196876
Target:  5'- uGCCUcGgCC-UGGCCCGCGACgcggCCCGGGc -3'
miRNA:   3'- -CGGA-CgGGuACCGGGCGCUG----GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 11591 0.76 0.201438
Target:  5'- gGCC-GCCCAgGGCCgGgGACCCCgAGGc -3'
miRNA:   3'- -CGGaCGGGUaCCGGgCgCUGGGG-UCC- -5'
8975 3' -63.5 NC_002512.2 + 72522 0.75 0.225645
Target:  5'- cCCUGCCCGgcGGCCCG-GACCUCGGcGg -3'
miRNA:   3'- cGGACGGGUa-CCGGGCgCUGGGGUC-C- -5'
8975 3' -63.5 NC_002512.2 + 137073 0.75 0.241324
Target:  5'- cGCCgcGCCCGggaacaGGCCCGCGguguGCgCCCAGGc -3'
miRNA:   3'- -CGGa-CGGGUa-----CCGGGCGC----UG-GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 121439 0.75 0.243482
Target:  5'- cGCC-GCCCGgggagggaccccccGGCCCcCGGCCCCGGGc -3'
miRNA:   3'- -CGGaCGGGUa-------------CCGGGcGCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 105817 0.75 0.252275
Target:  5'- aGCCUGCUCuccGG-CCGCGugCUCAGGa -3'
miRNA:   3'- -CGGACGGGua-CCgGGCGCugGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 12210 0.74 0.257902
Target:  5'- aGCCaGCCCAaGcGCCCG-GACCCgAGGa -3'
miRNA:   3'- -CGGaCGGGUaC-CGGGCgCUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 59164 0.74 0.275398
Target:  5'- gGCCUGgaaCCCGUGcCUCGUGACCCCGGc -3'
miRNA:   3'- -CGGAC---GGGUACcGGGCGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 99507 0.74 0.293201
Target:  5'- gGCCUGCCCGUGGUcaucuCCGaGACggugagcgguccgCCCGGGg -3'
miRNA:   3'- -CGGACGGGUACCG-----GGCgCUG-------------GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 72794 0.74 0.293831
Target:  5'- cGCCgggacggGCCCGccgugGGCgCCgGCGACCCCGGa -3'
miRNA:   3'- -CGGa------CGGGUa----CCG-GG-CGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 99733 0.73 0.300186
Target:  5'- gGCCgGCCCGccgccgGGcCCCGCGgccgcgacaccACCCCGGGc -3'
miRNA:   3'- -CGGaCGGGUa-----CC-GGGCGC-----------UGGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.