Results 1 - 20 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8975 | 3' | -63.5 | NC_002512.2 | + | 73838 | 0.65 | 0.723014 |
Target: 5'- aGCCU-CgCCGUGucgcgaCCCGCaugcacuGGCCCCAGGa -3' miRNA: 3'- -CGGAcG-GGUACc-----GGGCG-------CUGGGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 125106 | 0.66 | 0.676726 |
Target: 5'- gGCCUGUCCcgcgcucaagaugAUGGUCaugcagcaCGCGugaaccgcggggGCCCCGGGg -3' miRNA: 3'- -CGGACGGG-------------UACCGG--------GCGC------------UGGGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 126750 | 0.66 | 0.693525 |
Target: 5'- uGCCUGCUCuggcugcucuucugcGGCCCGCGcaGCCUguGu -3' miRNA: 3'- -CGGACGGGua-------------CCGGGCGC--UGGGguCc -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 92641 | 0.66 | 0.714779 |
Target: 5'- cGCCgGCgCcgGGaCCCGCGcggaUCCGGGa -3' miRNA: 3'- -CGGaCGgGuaCC-GGGCGCug--GGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 130006 | 0.66 | 0.714779 |
Target: 5'- cGCgUGCCCGU-GUCCGCG-CUCCGcguGGu -3' miRNA: 3'- -CGgACGGGUAcCGGGCGCuGGGGU---CC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 31738 | 0.66 | 0.714779 |
Target: 5'- cGCCgacccgGCCCGcgcggGGCUCGCGcuucgccaACCUCAaGGg -3' miRNA: 3'- -CGGa-----CGGGUa----CCGGGCGC--------UGGGGU-CC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 265 | 0.66 | 0.665469 |
Target: 5'- cGCCUGCCCuucGGucCCCGCucccucuccgcccgGGCCCCu-- -3' miRNA: 3'- -CGGACGGGua-CC--GGGCG--------------CUGGGGucc -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 2650 | 0.66 | 0.712022 |
Target: 5'- uGCCcGCCCGUccgccgcgccucccGGUCCGCcGCCuCCuGGu -3' miRNA: 3'- -CGGaCGGGUA--------------CCGGGCGcUGG-GGuCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 36423 | 0.66 | 0.668287 |
Target: 5'- gGCCUcGuCCCGgagGGCCCGCucccGCCaCCGGcGg -3' miRNA: 3'- -CGGA-C-GGGUa--CCGGGCGc---UGG-GGUC-C- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 2786 | 0.66 | 0.705572 |
Target: 5'- cGUCUgaGCCCGacccGGCCgGCGGCCggCGGGa -3' miRNA: 3'- -CGGA--CGGGUa---CCGGgCGCUGGg-GUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 44402 | 0.66 | 0.705572 |
Target: 5'- gGCgUGCgCCAUGaCCUGCGGCggCAGGa -3' miRNA: 3'- -CGgACG-GGUACcGGGCGCUGggGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 65368 | 0.66 | 0.667348 |
Target: 5'- cGCC-GCCCuUGGUcacguuaCCGCGcuuCCCCuGGg -3' miRNA: 3'- -CGGaCGGGuACCG-------GGCGCu--GGGGuCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 93262 | 0.66 | 0.714779 |
Target: 5'- cCCUGUCCAaGGCCacgcuggagggCGCGGCCCg--- -3' miRNA: 3'- cGGACGGGUaCCGG-----------GCGCUGGGgucc -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 195342 | 0.66 | 0.714779 |
Target: 5'- uGCgUGaCCC--GGCgCCGgGaACCCCGGGu -3' miRNA: 3'- -CGgAC-GGGuaCCG-GGCgC-UGGGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 145019 | 0.66 | 0.714779 |
Target: 5'- cGCCcgcuacGCCCG-GGCgCGCaACgCCCGGGa -3' miRNA: 3'- -CGGa-----CGGGUaCCGgGCGcUG-GGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 229668 | 0.66 | 0.665469 |
Target: 5'- cGCCUGCCCuucGGucCCCGCucccucuccgcccgGGCCCCu-- -3' miRNA: 3'- -CGGACGGGua-CC--GGGCG--------------CUGGGGucc -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 150735 | 0.66 | 0.714779 |
Target: 5'- -aCUuCCCGUcGGCCCGCGcgcGgCCCAGa -3' miRNA: 3'- cgGAcGGGUA-CCGGGCGC---UgGGGUCc -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 132467 | 0.66 | 0.668287 |
Target: 5'- cGCCaGCaCCAucgUGGCCa---GCCCCAGGa -3' miRNA: 3'- -CGGaCG-GGU---ACCGGgcgcUGGGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 99386 | 0.66 | 0.714779 |
Target: 5'- cGCCaGCgUCggGGUCCG-GACuCCCGGGg -3' miRNA: 3'- -CGGaCG-GGuaCCGGGCgCUG-GGGUCC- -5' |
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8975 | 3' | -63.5 | NC_002512.2 | + | 133674 | 0.66 | 0.677663 |
Target: 5'- cGCCgcgGCcgCCGUGGCCgaccuCGCGGCCgCCucccGGa -3' miRNA: 3'- -CGGa--CG--GGUACCGG-----GCGCUGG-GGu---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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