miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 3' -63.5 NC_002512.2 + 265 0.66 0.665469
Target:  5'- cGCCUGCCCuucGGucCCCGCucccucuccgcccgGGCCCCu-- -3'
miRNA:   3'- -CGGACGGGua-CC--GGGCG--------------CUGGGGucc -5'
8975 3' -63.5 NC_002512.2 + 1901 0.69 0.528124
Target:  5'- uCCgGCCCucGGCCCuCGGCgCCGGGg -3'
miRNA:   3'- cGGaCGGGuaCCGGGcGCUGgGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 2499 0.68 0.580749
Target:  5'- gGCCuUGgggaacggaucuccCCCGacGCCgGCGGCCCCGGGc -3'
miRNA:   3'- -CGG-AC--------------GGGUacCGGgCGCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 2650 0.66 0.712022
Target:  5'- uGCCcGCCCGUccgccgcgccucccGGUCCGCcGCCuCCuGGu -3'
miRNA:   3'- -CGGaCGGGUA--------------CCGGGCGcUGG-GGuCC- -5'
8975 3' -63.5 NC_002512.2 + 2786 0.66 0.705572
Target:  5'- cGUCUgaGCCCGacccGGCCgGCGGCCggCGGGa -3'
miRNA:   3'- -CGGA--CGGGUa---CCGGgCGCUGGg-GUCC- -5'
8975 3' -63.5 NC_002512.2 + 2982 0.69 0.537243
Target:  5'- gGCCUccuugGCCCccgcGUGGCCCG-G-UCCCGGGc -3'
miRNA:   3'- -CGGA-----CGGG----UACCGGGCgCuGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 3562 0.71 0.384672
Target:  5'- cGUCUGCcgucccgagCCAcGGCCCacaGGCCCCGGGg -3'
miRNA:   3'- -CGGACG---------GGUaCCGGGcg-CUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 4093 0.71 0.424233
Target:  5'- gGCC-GCCCGcGGCCCggccgGCGcaGCCUCGGGa -3'
miRNA:   3'- -CGGaCGGGUaCCGGG-----CGC--UGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 5534 0.7 0.440724
Target:  5'- gGUCU-CCC---GCCCGCGACCCCGGc -3'
miRNA:   3'- -CGGAcGGGuacCGGGCGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 6953 0.7 0.449106
Target:  5'- gGCCgGCCaggucguUGGCCCGCGggccgaGCCUCAGa -3'
miRNA:   3'- -CGGaCGGgu-----ACCGGGCGC------UGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 7432 0.69 0.501131
Target:  5'- gGCCgGCgCGaGGUuggCCGCGGCCCgGGGg -3'
miRNA:   3'- -CGGaCGgGUaCCG---GGCGCUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 8494 0.68 0.602323
Target:  5'- cGCCU-CCCc--GCCCGCGccccGCCCgAGGa -3'
miRNA:   3'- -CGGAcGGGuacCGGGCGC----UGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 9577 0.68 0.546416
Target:  5'- aGCCcgGCCCccGGCCCcccgGCGGCUCggCGGGc -3'
miRNA:   3'- -CGGa-CGGGuaCCGGG----CGCUGGG--GUCC- -5'
8975 3' -63.5 NC_002512.2 + 11591 0.76 0.201438
Target:  5'- gGCC-GCCCAgGGCCgGgGACCCCgAGGc -3'
miRNA:   3'- -CGGaCGGGUaCCGGgCgCUGGGG-UCC- -5'
8975 3' -63.5 NC_002512.2 + 11668 0.72 0.369546
Target:  5'- cGCCgcgGCCCGccgcGGCCCGaggcgggGGCCCgAGGg -3'
miRNA:   3'- -CGGa--CGGGUa---CCGGGCg------CUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 12097 0.68 0.592926
Target:  5'- cGCCgauccGCCagccGG-CCGCGACCCCGGc -3'
miRNA:   3'- -CGGa----CGGgua-CCgGGCGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 12210 0.74 0.257902
Target:  5'- aGCCaGCCCAaGcGCCCG-GACCCgAGGa -3'
miRNA:   3'- -CGGaCGGGUaC-CGGGCgCUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 14926 0.7 0.466127
Target:  5'- gGUCUGgauccggacCCCGUGcGUCCGCGGCCaCGGGa -3'
miRNA:   3'- -CGGAC---------GGGUAC-CGGGCGCUGGgGUCC- -5'
8975 3' -63.5 NC_002512.2 + 16877 0.69 0.509168
Target:  5'- aCCUcgagaggGCCCcgGGCCCGaCGGCCgCGGc -3'
miRNA:   3'- cGGA-------CGGGuaCCGGGC-GCUGGgGUCc -5'
8975 3' -63.5 NC_002512.2 + 21169 0.68 0.583555
Target:  5'- gGCgCU-CCCGaucUGGUCgGCGAgCCCCGGGu -3'
miRNA:   3'- -CG-GAcGGGU---ACCGGgCGCU-GGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.