miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 3' -63.5 NC_002512.2 + 3562 0.71 0.384672
Target:  5'- cGUCUGCcgucccgagCCAcGGCCCacaGGCCCCGGGg -3'
miRNA:   3'- -CGGACG---------GGUaCCGGGcg-CUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 72794 0.74 0.293831
Target:  5'- cGCCgggacggGCCCGccgugGGCgCCgGCGACCCCGGa -3'
miRNA:   3'- -CGGa------CGGGUa----CCG-GG-CGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 135287 0.73 0.302757
Target:  5'- cGCCUGCUUcgGGCCCcaguucgccuguccgGCGGuCCCCgAGGu -3'
miRNA:   3'- -CGGACGGGuaCCGGG---------------CGCU-GGGG-UCC- -5'
8975 3' -63.5 NC_002512.2 + 129815 0.73 0.306646
Target:  5'- cGCUccGUCCccGGCCCGCGGCCCCc-- -3'
miRNA:   3'- -CGGa-CGGGuaCCGGGCGCUGGGGucc -5'
8975 3' -63.5 NC_002512.2 + 99351 0.73 0.333547
Target:  5'- cGCCUGUCCGgcaUGuuCCCGCGACCCgAGc -3'
miRNA:   3'- -CGGACGGGU---ACc-GGGCGCUGGGgUCc -5'
8975 3' -63.5 NC_002512.2 + 126390 0.73 0.333547
Target:  5'- cGCgCUGCCCGgcgagcGGUCCGCGGCCgCCGc- -3'
miRNA:   3'- -CG-GACGGGUa-----CCGGGCGCUGG-GGUcc -5'
8975 3' -63.5 NC_002512.2 + 113696 0.72 0.369546
Target:  5'- cGCCUGCC--UGGCCCGCaGCgCguGGa -3'
miRNA:   3'- -CGGACGGguACCGGGCGcUGgGguCC- -5'
8975 3' -63.5 NC_002512.2 + 126959 0.72 0.369546
Target:  5'- cGCCUGUuacgaCCuggGGCCCGUGGCCgucgaccgcgCCAGGc -3'
miRNA:   3'- -CGGACG-----GGua-CCGGGCGCUGG----------GGUCC- -5'
8975 3' -63.5 NC_002512.2 + 11668 0.72 0.369546
Target:  5'- cGCCgcgGCCCGccgcGGCCCGaggcgggGGCCCgAGGg -3'
miRNA:   3'- -CGGa--CGGGUa---CCGGGCg------CUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 99507 0.74 0.293201
Target:  5'- gGCCUGCCCGUGGUcaucuCCGaGACggugagcgguccgCCCGGGg -3'
miRNA:   3'- -CGGACGGGUACCG-----GGCgCUG-------------GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 59164 0.74 0.275398
Target:  5'- gGCCUGgaaCCCGUGcCUCGUGACCCCGGc -3'
miRNA:   3'- -CGGAC---GGGUACcGGGCGCUGGGGUCc -5'
8975 3' -63.5 NC_002512.2 + 12210 0.74 0.257902
Target:  5'- aGCCaGCCCAaGcGCCCG-GACCCgAGGa -3'
miRNA:   3'- -CGGaCGGGUaC-CGGGCgCUGGGgUCC- -5'
8975 3' -63.5 NC_002512.2 + 72748 0.79 0.131854
Target:  5'- cGCCcGCCCcgGGCCCGCcgccGACCCCcgacgccGGGa -3'
miRNA:   3'- -CGGaCGGGuaCCGGGCG----CUGGGG-------UCC- -5'
8975 3' -63.5 NC_002512.2 + 61451 0.79 0.141954
Target:  5'- uCCUGCUgGUGGCCCGgGACCuguaCCGGGu -3'
miRNA:   3'- cGGACGGgUACCGGGCgCUGG----GGUCC- -5'
8975 3' -63.5 NC_002512.2 + 107634 0.79 0.141954
Target:  5'- cGgCUGCCCGUGGUUCGCGugguggcucaGCCUCAGGa -3'
miRNA:   3'- -CgGACGGGUACCGGGCGC----------UGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 11591 0.76 0.201438
Target:  5'- gGCC-GCCCAgGGCCgGgGACCCCgAGGc -3'
miRNA:   3'- -CGGaCGGGUaCCGGgCgCUGGGG-UCC- -5'
8975 3' -63.5 NC_002512.2 + 72522 0.75 0.225645
Target:  5'- cCCUGCCCGgcGGCCCG-GACCUCGGcGg -3'
miRNA:   3'- cGGACGGGUa-CCGGGCgCUGGGGUC-C- -5'
8975 3' -63.5 NC_002512.2 + 137073 0.75 0.241324
Target:  5'- cGCCgcGCCCGggaacaGGCCCGCGguguGCgCCCAGGc -3'
miRNA:   3'- -CGGa-CGGGUa-----CCGGGCGC----UG-GGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 121439 0.75 0.243482
Target:  5'- cGCC-GCCCGgggagggaccccccGGCCCcCGGCCCCGGGc -3'
miRNA:   3'- -CGGaCGGGUa-------------CCGGGcGCUGGGGUCC- -5'
8975 3' -63.5 NC_002512.2 + 105817 0.75 0.252275
Target:  5'- aGCCUGCUCuccGG-CCGCGugCUCAGGa -3'
miRNA:   3'- -CGGACGGGua-CCgGGCGCugGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.