miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 5' -56 NC_002512.2 + 137059 0.66 0.938821
Target:  5'- gGCCagGGAGGAGgcGcCGCGCCcgGg- -3'
miRNA:   3'- -CGGgaCCUCUUCuaC-GCGCGGuaCag -5'
8975 5' -56 NC_002512.2 + 121525 0.68 0.89419
Target:  5'- aUCCUcGGGGAGcuccgGCGCGCCGggGUCg -3'
miRNA:   3'- cGGGA-CCUCUUcua--CGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 32177 0.67 0.912637
Target:  5'- aCCCUGGGGuc---GCGgGCCAUGg- -3'
miRNA:   3'- cGGGACCUCuucuaCGCgCGGUACag -5'
8975 5' -56 NC_002512.2 + 60845 0.67 0.918333
Target:  5'- cGCCC--GAGGAGAUGCcgGCGCCGc--- -3'
miRNA:   3'- -CGGGacCUCUUCUACG--CGCGGUacag -5'
8975 5' -56 NC_002512.2 + 72028 0.67 0.923799
Target:  5'- cGCCCUGGAuGGGcagcuUGCGCuGCgCGUGcCg -3'
miRNA:   3'- -CGGGACCUcUUCu----ACGCG-CG-GUACaG- -5'
8975 5' -56 NC_002512.2 + 124001 0.67 0.929036
Target:  5'- aGCCCaccgggugGGAGAcGGAcccGCGCGCCugcGUCc -3'
miRNA:   3'- -CGGGa-------CCUCU-UCUa--CGCGCGGua-CAG- -5'
8975 5' -56 NC_002512.2 + 82026 0.67 0.929036
Target:  5'- cGCCCgGGucGGGGU-CGCGCCGgcggcgGUCg -3'
miRNA:   3'- -CGGGaCCucUUCUAcGCGCGGUa-----CAG- -5'
8975 5' -56 NC_002512.2 + 59404 0.66 0.932565
Target:  5'- gGCgCUGGAGAucGAcacgcgcugcaaccUGUGCGCCAUcGUg -3'
miRNA:   3'- -CGgGACCUCUu-CU--------------ACGCGCGGUA-CAg -5'
8975 5' -56 NC_002512.2 + 32841 0.66 0.938821
Target:  5'- uGCCCaGGcugcAGGAGGUGacgGUGCCGUGg- -3'
miRNA:   3'- -CGGGaCC----UCUUCUACg--CGCGGUACag -5'
8975 5' -56 NC_002512.2 + 47256 0.68 0.89419
Target:  5'- gGCgCUGGAGAAGAUcGCGacgGCCAc--- -3'
miRNA:   3'- -CGgGACCUCUUCUA-CGCg--CGGUacag -5'
8975 5' -56 NC_002512.2 + 47315 0.68 0.886925
Target:  5'- aGCUgCUGGAGGAGAUguaccgcgGCGCGUUcgaggccuuccggGUGUCg -3'
miRNA:   3'- -CGG-GACCUCUUCUA--------CGCGCGG-------------UACAG- -5'
8975 5' -56 NC_002512.2 + 20711 0.68 0.880786
Target:  5'- cGUCCacGAGGAucuUGCGCGCCGUGcCg -3'
miRNA:   3'- -CGGGacCUCUUcu-ACGCGCGGUACaG- -5'
8975 5' -56 NC_002512.2 + 127600 0.72 0.708419
Target:  5'- cGCCCUGGcGGucGAcGCGCGCCGa--- -3'
miRNA:   3'- -CGGGACC-UCuuCUaCGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 92167 0.7 0.784121
Target:  5'- uCCCUGGAGAA----CGCcgGCCAUGUCu -3'
miRNA:   3'- cGGGACCUCUUcuacGCG--CGGUACAG- -5'
8975 5' -56 NC_002512.2 + 87674 0.69 0.840465
Target:  5'- gGCCCUGGGGcucuuaacgGCGCGCCGa--- -3'
miRNA:   3'- -CGGGACCUCuucua----CGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 93371 0.69 0.851468
Target:  5'- uCCCgGGAGggGAUcgggccgcaggGCGCGCCGa--- -3'
miRNA:   3'- cGGGaCCUCuuCUA-----------CGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 88931 0.69 0.859099
Target:  5'- aGUUCgggGGAGAAGcgGCGCGUCucGUCc -3'
miRNA:   3'- -CGGGa--CCUCUUCuaCGCGCGGuaCAG- -5'
8975 5' -56 NC_002512.2 + 59376 0.68 0.866533
Target:  5'- -aCgUGGcGGAGAUGCGCGaCAUGUg -3'
miRNA:   3'- cgGgACCuCUUCUACGCGCgGUACAg -5'
8975 5' -56 NC_002512.2 + 81882 0.68 0.876598
Target:  5'- gGCCCagGGAGGccgugguguacucgcGGAggucGUGCGCCGUGg- -3'
miRNA:   3'- -CGGGa-CCUCU---------------UCUa---CGCGCGGUACag -5'
8975 5' -56 NC_002512.2 + 97235 0.68 0.880786
Target:  5'- gGCgCUgGGAGAGGAgcUGCGgGCCgaGUGUa -3'
miRNA:   3'- -CGgGA-CCUCUUCU--ACGCgCGG--UACAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.