miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 5' -56 NC_002512.2 + 197739 1.1 0.003394
Target:  5'- gGCCCUGGAGAAGAUGCGCGCCAUGUCc -3'
miRNA:   3'- -CGGGACCUCUUCUACGCGCGGUACAG- -5'
8975 5' -56 NC_002512.2 + 91909 0.73 0.628713
Target:  5'- cUCCUGGGGcGGcgGCGCGCC--GUCg -3'
miRNA:   3'- cGGGACCUCuUCuaCGCGCGGuaCAG- -5'
8975 5' -56 NC_002512.2 + 127600 0.72 0.708419
Target:  5'- cGCCCUGGcGGucGAcGCGCGCCGa--- -3'
miRNA:   3'- -CGGGACC-UCuuCUaCGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 92167 0.7 0.784121
Target:  5'- uCCCUGGAGAA----CGCcgGCCAUGUCu -3'
miRNA:   3'- cGGGACCUCUUcuacGCG--CGGUACAG- -5'
8975 5' -56 NC_002512.2 + 222695 0.7 0.793083
Target:  5'- cGCCCggcacGGGGAGGAgUGCGuCGCCAccUGcCu -3'
miRNA:   3'- -CGGGa----CCUCUUCU-ACGC-GCGGU--ACaG- -5'
8975 5' -56 NC_002512.2 + 220529 0.7 0.819099
Target:  5'- -aCCUGGAGGAGcUGCuGCGCgAgggcGUCa -3'
miRNA:   3'- cgGGACCUCUUCuACG-CGCGgUa---CAG- -5'
8975 5' -56 NC_002512.2 + 192667 0.69 0.827454
Target:  5'- uGCCCcacucggaucUGGGGGAGGUguggcgGCGCGCCGaggccGUCu -3'
miRNA:   3'- -CGGG----------ACCUCUUCUA------CGCGCGGUa----CAG- -5'
8975 5' -56 NC_002512.2 + 87674 0.69 0.840465
Target:  5'- gGCCCUGGGGcucuuaacgGCGCGCCGa--- -3'
miRNA:   3'- -CGGGACCUCuucua----CGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 171655 0.69 0.841263
Target:  5'- gGCCCUGuugcGGGAcaucuacgcgcgcgGGGUGCGCGCCGc--- -3'
miRNA:   3'- -CGGGAC----CUCU--------------UCUACGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 211883 0.69 0.851468
Target:  5'- cGCCCUGGAGcGGGUcaccuuccgGgGCuGCCGcGUCg -3'
miRNA:   3'- -CGGGACCUCuUCUA---------CgCG-CGGUaCAG- -5'
8975 5' -56 NC_002512.2 + 93371 0.69 0.851468
Target:  5'- uCCCgGGAGggGAUcgggccgcaggGCGCGCCGa--- -3'
miRNA:   3'- cGGGaCCUCuuCUA-----------CGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 88931 0.69 0.859099
Target:  5'- aGUUCgggGGAGAAGcgGCGCGUCucGUCc -3'
miRNA:   3'- -CGGGa--CCUCUUCuaCGCGCGGuaCAG- -5'
8975 5' -56 NC_002512.2 + 59376 0.68 0.866533
Target:  5'- -aCgUGGcGGAGAUGCGCGaCAUGUg -3'
miRNA:   3'- cgGgACCuCUUCUACGCGCgGUACAg -5'
8975 5' -56 NC_002512.2 + 207454 0.68 0.873763
Target:  5'- aGCCCagcGGAuGggGuUGCGCGuCCGaGUCg -3'
miRNA:   3'- -CGGGa--CCU-CuuCuACGCGC-GGUaCAG- -5'
8975 5' -56 NC_002512.2 + 81882 0.68 0.876598
Target:  5'- gGCCCagGGAGGccgugguguacucgcGGAggucGUGCGCCGUGg- -3'
miRNA:   3'- -CGGGa-CCUCU---------------UCUa---CGCGCGGUACag -5'
8975 5' -56 NC_002512.2 + 20711 0.68 0.880786
Target:  5'- cGUCCacGAGGAucuUGCGCGCCGUGcCg -3'
miRNA:   3'- -CGGGacCUCUUcu-ACGCGCGGUACaG- -5'
8975 5' -56 NC_002512.2 + 97235 0.68 0.880786
Target:  5'- gGCgCUgGGAGAGGAgcUGCGgGCCgaGUGUa -3'
miRNA:   3'- -CGgGA-CCUCUUCU--ACGCgCGG--UACAg -5'
8975 5' -56 NC_002512.2 + 47315 0.68 0.886925
Target:  5'- aGCUgCUGGAGGAGAUguaccgcgGCGCGUUcgaggccuuccggGUGUCg -3'
miRNA:   3'- -CGG-GACCUCUUCUA--------CGCGCGG-------------UACAG- -5'
8975 5' -56 NC_002512.2 + 133256 0.68 0.887596
Target:  5'- uCCCggcGGGGAAGAUGC-CGCCGa--- -3'
miRNA:   3'- cGGGa--CCUCUUCUACGcGCGGUacag -5'
8975 5' -56 NC_002512.2 + 121525 0.68 0.89419
Target:  5'- aUCCUcGGGGAGcuccgGCGCGCCGggGUCg -3'
miRNA:   3'- cGGGA-CCUCUUcua--CGCGCGGUa-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.