miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 5' -56 NC_002512.2 + 47256 0.68 0.89419
Target:  5'- gGCgCUGGAGAAGAUcGCGacgGCCAc--- -3'
miRNA:   3'- -CGgGACCUCUUCUA-CGCg--CGGUacag -5'
8975 5' -56 NC_002512.2 + 179394 0.68 0.900563
Target:  5'- cGCCUcGGGGA---UGCGCGCCAUc-- -3'
miRNA:   3'- -CGGGaCCUCUucuACGCGCGGUAcag -5'
8975 5' -56 NC_002512.2 + 218092 0.67 0.906713
Target:  5'- uGUCCgUGGGGAAGcgGgcguCGCGCCcgggGUCg -3'
miRNA:   3'- -CGGG-ACCUCUUCuaC----GCGCGGua--CAG- -5'
8975 5' -56 NC_002512.2 + 177560 0.67 0.912637
Target:  5'- cGUCUgguucGGGGccgucgccAGGAUGCGCGCCAgcGUCu -3'
miRNA:   3'- -CGGGa----CCUC--------UUCUACGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 32177 0.67 0.912637
Target:  5'- aCCCUGGGGuc---GCGgGCCAUGg- -3'
miRNA:   3'- cGGGACCUCuucuaCGCgCGGUACag -5'
8975 5' -56 NC_002512.2 + 60845 0.67 0.918333
Target:  5'- cGCCC--GAGGAGAUGCcgGCGCCGc--- -3'
miRNA:   3'- -CGGGacCUCUUCUACG--CGCGGUacag -5'
8975 5' -56 NC_002512.2 + 72028 0.67 0.923799
Target:  5'- cGCCCUGGAuGGGcagcuUGCGCuGCgCGUGcCg -3'
miRNA:   3'- -CGGGACCUcUUCu----ACGCG-CG-GUACaG- -5'
8975 5' -56 NC_002512.2 + 124001 0.67 0.929036
Target:  5'- aGCCCaccgggugGGAGAcGGAcccGCGCGCCugcGUCc -3'
miRNA:   3'- -CGGGa-------CCUCU-UCUa--CGCGCGGua-CAG- -5'
8975 5' -56 NC_002512.2 + 82026 0.67 0.929036
Target:  5'- cGCCCgGGucGGGGU-CGCGCCGgcggcgGUCg -3'
miRNA:   3'- -CGGGaCCucUUCUAcGCGCGGUa-----CAG- -5'
8975 5' -56 NC_002512.2 + 185427 0.67 0.929036
Target:  5'- cGCCCUGGAGGucuucGAgGC-CGUCcUGUCc -3'
miRNA:   3'- -CGGGACCUCUu----CUaCGcGCGGuACAG- -5'
8975 5' -56 NC_002512.2 + 163692 0.67 0.929036
Target:  5'- cGCCCUGuccGA--AUGCGUGCCG-GUCg -3'
miRNA:   3'- -CGGGACcu-CUucUACGCGCGGUaCAG- -5'
8975 5' -56 NC_002512.2 + 59404 0.66 0.932565
Target:  5'- gGCgCUGGAGAucGAcacgcgcugcaaccUGUGCGCCAUcGUg -3'
miRNA:   3'- -CGgGACCUCUu-CU--------------ACGCGCGGUA-CAg -5'
8975 5' -56 NC_002512.2 + 220982 0.66 0.934043
Target:  5'- cGCCCUGGccaGGAGGGUcgaGUGCcCCAacggcuucUGUCa -3'
miRNA:   3'- -CGGGACC---UCUUCUA---CGCGcGGU--------ACAG- -5'
8975 5' -56 NC_002512.2 + 102452 0.66 0.937884
Target:  5'- aCCCgcauggcgucgcGGAGGAGG-GCGCGCCc-GUCg -3'
miRNA:   3'- cGGGa-----------CCUCUUCUaCGCGCGGuaCAG- -5'
8975 5' -56 NC_002512.2 + 90102 0.66 0.938821
Target:  5'- cGgCCUGGAGg----GUGCGCCGgacgaUGUCg -3'
miRNA:   3'- -CgGGACCUCuucuaCGCGCGGU-----ACAG- -5'
8975 5' -56 NC_002512.2 + 137059 0.66 0.938821
Target:  5'- gGCCagGGAGGAGgcGcCGCGCCcgGg- -3'
miRNA:   3'- -CGGgaCCUCUUCuaC-GCGCGGuaCag -5'
8975 5' -56 NC_002512.2 + 32841 0.66 0.938821
Target:  5'- uGCCCaGGcugcAGGAGGUGacgGUGCCGUGg- -3'
miRNA:   3'- -CGGGaCC----UCUUCUACg--CGCGGUACag -5'
8975 5' -56 NC_002512.2 + 119276 0.66 0.938821
Target:  5'- gGCCCUGGAGGacagcAGcAUGC-UGCUgaugaaGUGUCa -3'
miRNA:   3'- -CGGGACCUCU-----UC-UACGcGCGG------UACAG- -5'
8975 5' -56 NC_002512.2 + 76349 0.66 0.943371
Target:  5'- uCCC-GGAGAAGAUGUcgagcgacauGCaGCCGUGa- -3'
miRNA:   3'- cGGGaCCUCUUCUACG----------CG-CGGUACag -5'
8975 5' -56 NC_002512.2 + 123638 0.66 0.943371
Target:  5'- gGUCCcGG-GGAGA-GCGCGCCGcgGUUc -3'
miRNA:   3'- -CGGGaCCuCUUCUaCGCGCGGUa-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.