miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 5' -56 NC_002512.2 + 97235 0.68 0.880786
Target:  5'- gGCgCUgGGAGAGGAgcUGCGgGCCgaGUGUa -3'
miRNA:   3'- -CGgGA-CCUCUUCU--ACGCgCGG--UACAg -5'
8975 5' -56 NC_002512.2 + 102452 0.66 0.937884
Target:  5'- aCCCgcauggcgucgcGGAGGAGG-GCGCGCCc-GUCg -3'
miRNA:   3'- cGGGa-----------CCUCUUCUaCGCGCGGuaCAG- -5'
8975 5' -56 NC_002512.2 + 119276 0.66 0.938821
Target:  5'- gGCCCUGGAGGacagcAGcAUGC-UGCUgaugaaGUGUCa -3'
miRNA:   3'- -CGGGACCUCU-----UC-UACGcGCGG------UACAG- -5'
8975 5' -56 NC_002512.2 + 121525 0.68 0.89419
Target:  5'- aUCCUcGGGGAGcuccgGCGCGCCGggGUCg -3'
miRNA:   3'- cGGGA-CCUCUUcua--CGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 123638 0.66 0.943371
Target:  5'- gGUCCcGG-GGAGA-GCGCGCCGcgGUUc -3'
miRNA:   3'- -CGGGaCCuCUUCUaCGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 124001 0.67 0.929036
Target:  5'- aGCCCaccgggugGGAGAcGGAcccGCGCGCCugcGUCc -3'
miRNA:   3'- -CGGGa-------CCUCU-UCUa--CGCGCGGua-CAG- -5'
8975 5' -56 NC_002512.2 + 127600 0.72 0.708419
Target:  5'- cGCCCUGGcGGucGAcGCGCGCCGa--- -3'
miRNA:   3'- -CGGGACC-UCuuCUaCGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 133256 0.68 0.887596
Target:  5'- uCCCggcGGGGAAGAUGC-CGCCGa--- -3'
miRNA:   3'- cGGGa--CCUCUUCUACGcGCGGUacag -5'
8975 5' -56 NC_002512.2 + 137059 0.66 0.938821
Target:  5'- gGCCagGGAGGAGgcGcCGCGCCcgGg- -3'
miRNA:   3'- -CGGgaCCUCUUCuaC-GCGCGGuaCag -5'
8975 5' -56 NC_002512.2 + 141423 0.66 0.947694
Target:  5'- aUCCUGGAGAGGGgacUGCccCGCCugcugGUCc -3'
miRNA:   3'- cGGGACCUCUUCU---ACGc-GCGGua---CAG- -5'
8975 5' -56 NC_002512.2 + 146819 0.66 0.943371
Target:  5'- -aCCUGGAGAccuucGCGCGCgAgGUCg -3'
miRNA:   3'- cgGGACCUCUucua-CGCGCGgUaCAG- -5'
8975 5' -56 NC_002512.2 + 163692 0.67 0.929036
Target:  5'- cGCCCUGuccGA--AUGCGUGCCG-GUCg -3'
miRNA:   3'- -CGGGACcu-CUucUACGCGCGGUaCAG- -5'
8975 5' -56 NC_002512.2 + 171655 0.69 0.841263
Target:  5'- gGCCCUGuugcGGGAcaucuacgcgcgcgGGGUGCGCGCCGc--- -3'
miRNA:   3'- -CGGGAC----CUCU--------------UCUACGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 177560 0.67 0.912637
Target:  5'- cGUCUgguucGGGGccgucgccAGGAUGCGCGCCAgcGUCu -3'
miRNA:   3'- -CGGGa----CCUC--------UUCUACGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 179394 0.68 0.900563
Target:  5'- cGCCUcGGGGA---UGCGCGCCAUc-- -3'
miRNA:   3'- -CGGGaCCUCUucuACGCGCGGUAcag -5'
8975 5' -56 NC_002512.2 + 185427 0.67 0.929036
Target:  5'- cGCCCUGGAGGucuucGAgGC-CGUCcUGUCc -3'
miRNA:   3'- -CGGGACCUCUu----CUaCGcGCGGuACAG- -5'
8975 5' -56 NC_002512.2 + 187052 0.66 0.951793
Target:  5'- uCCCUGGAGAcgggcuGGAUGaCGUcucaggagGCCGUGc- -3'
miRNA:   3'- cGGGACCUCU------UCUAC-GCG--------CGGUACag -5'
8975 5' -56 NC_002512.2 + 192667 0.69 0.827454
Target:  5'- uGCCCcacucggaucUGGGGGAGGUguggcgGCGCGCCGaggccGUCu -3'
miRNA:   3'- -CGGG----------ACCUCUUCUA------CGCGCGGUa----CAG- -5'
8975 5' -56 NC_002512.2 + 197739 1.1 0.003394
Target:  5'- gGCCCUGGAGAAGAUGCGCGCCAUGUCc -3'
miRNA:   3'- -CGGGACCUCUUCUACGCGCGGUACAG- -5'
8975 5' -56 NC_002512.2 + 199891 0.66 0.943371
Target:  5'- cGCCCUGGucucGAGAc-CGC-CCGUGUCu -3'
miRNA:   3'- -CGGGACCuc--UUCUacGCGcGGUACAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.