Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 129035 | 0.68 | 0.911424 |
Target: 5'- aCCggcCGUGCGGGUCGUCUGUca-GAa -3' miRNA: 3'- aGGa--GUACGCCCGGCGGAUAaagCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 87850 | 0.68 | 0.91722 |
Target: 5'- cCCUCGcgGCGGGUCGCCggccccCGGc -3' miRNA: 3'- aGGAGUa-CGCCCGGCGGauaaa-GCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 134705 | 0.67 | 0.928112 |
Target: 5'- gUCCUCucGCGGGCgcucucCGCCUAg--CGAg -3' miRNA: 3'- -AGGAGuaCGCCCG------GCGGAUaaaGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 167426 | 0.66 | 0.955204 |
Target: 5'- aUCUCGUGCGgcGGCaCGCCUGcgcgUUCGu- -3' miRNA: 3'- aGGAGUACGC--CCG-GCGGAUa---AAGCua -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 214629 | 0.66 | 0.955204 |
Target: 5'- cCCUCGcggggacGCGGGCCGCCUcgcagUCu-- -3' miRNA: 3'- aGGAGUa------CGCCCGGCGGAuaa--AGcua -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 148421 | 0.66 | 0.962427 |
Target: 5'- gCCUCcUGCGGGaCCGCCgggggaGGa -3' miRNA: 3'- aGGAGuACGCCC-GGCGGauaaagCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 218217 | 0.66 | 0.965716 |
Target: 5'- gCCUCGggccgcgGCGGGCCGCggcgc-CGAUa -3' miRNA: 3'- aGGAGUa------CGCCCGGCGgauaaaGCUA- -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 129973 | 0.66 | 0.965716 |
Target: 5'- cCCUUcgGCGGGCCcCCggcgcccUCGAc -3' miRNA: 3'- aGGAGuaCGCCCGGcGGauaa---AGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 197611 | 1.05 | 0.007856 |
Target: 5'- cUCCUCAUGCGGGCCGCCUAUUUCGAUc -3' miRNA: 3'- -AGGAGUACGCCCGGCGGAUAAAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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