miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 8405 0.66 0.967613
Target:  5'- gGACgCCGAG-CGCcaggaacgCGcACCGCGGCCGg -3'
miRNA:   3'- -CUG-GGCUCaGCGua------GU-UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 24375 0.66 0.967613
Target:  5'- cGCUCGaAGUCGuCGUCcuCCGCGACg- -3'
miRNA:   3'- cUGGGC-UCAGC-GUAGuuGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 60879 0.66 0.967613
Target:  5'- cGCCCGGaUCGCcgagcCGGCgCGCGACCGc -3'
miRNA:   3'- cUGGGCUcAGCGua---GUUG-GCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 29233 0.66 0.967613
Target:  5'- cGGCCgCGGGUCGCG-CAGuCCGUccuCCGa -3'
miRNA:   3'- -CUGG-GCUCAGCGUaGUU-GGCGuu-GGU- -5'
8977 5' -54.9 NC_002512.2 + 144116 0.66 0.967308
Target:  5'- -cUCCGAGUCGCGgucuaucUCGGCCagguCGGCCGc -3'
miRNA:   3'- cuGGGCUCAGCGU-------AGUUGGc---GUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 212970 0.66 0.967308
Target:  5'- -uCCgGGGUCGagaucugcgaccuCAUCGucGCCGCGGCCGu -3'
miRNA:   3'- cuGGgCUCAGC-------------GUAGU--UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 173645 0.66 0.964474
Target:  5'- -cCCCGGGUCGgGggCGGCgGCAGCa- -3'
miRNA:   3'- cuGGGCUCAGCgUa-GUUGgCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 29323 0.66 0.964474
Target:  5'- gGACCgCGGG-CGCGauUCcccccgauACCGCGACCGc -3'
miRNA:   3'- -CUGG-GCUCaGCGU--AGu-------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 80656 0.66 0.964474
Target:  5'- cGGCgCCGGGUC-CGUCGGucCCGCGGCg- -3'
miRNA:   3'- -CUG-GGCUCAGcGUAGUU--GGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 107139 0.66 0.964474
Target:  5'- cGGCCCGGG-CGCccccAUCAGCgCGUuuCCGc -3'
miRNA:   3'- -CUGGGCUCaGCG----UAGUUG-GCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 139215 0.66 0.964474
Target:  5'- uGGCCCuGGcCGCcgCGGCCGCcgacuccgaGACCGc -3'
miRNA:   3'- -CUGGGcUCaGCGuaGUUGGCG---------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 201942 0.66 0.964474
Target:  5'- gGGCCCGGGUaCGUGggaGACCGCucuCCc -3'
miRNA:   3'- -CUGGGCUCA-GCGUag-UUGGCGuu-GGu -5'
8977 5' -54.9 NC_002512.2 + 228580 0.66 0.964474
Target:  5'- --aCCGcGGUCGUGUCGGCgGCAggcGCCGg -3'
miRNA:   3'- cugGGC-UCAGCGUAGUUGgCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 216184 0.66 0.964149
Target:  5'- -uCUCGGGaUCGCGcccgugaUCAccGCCGCGGCCGu -3'
miRNA:   3'- cuGGGCUC-AGCGU-------AGU--UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 37227 0.66 0.964149
Target:  5'- aGAUCCGAGUgGgG-CAGCCGCccccgcgAGCCGu -3'
miRNA:   3'- -CUGGGCUCAgCgUaGUUGGCG-------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 135839 0.66 0.964149
Target:  5'- cGCCCGucGUCGCcgaagagAUCcGCCGCGaaACCGa -3'
miRNA:   3'- cUGGGCu-CAGCG-------UAGuUGGCGU--UGGU- -5'
8977 5' -54.9 NC_002512.2 + 103093 0.66 0.96316
Target:  5'- cGAuCCCGGGgacgggcgcggcaCGCGUCGccGCCGCcGCCGc -3'
miRNA:   3'- -CU-GGGCUCa------------GCGUAGU--UGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 74612 0.67 0.961128
Target:  5'- cGGCUCGAGcCGCcUCGGcucCCGCgAGCCGu -3'
miRNA:   3'- -CUGGGCUCaGCGuAGUU---GGCG-UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 26550 0.67 0.961127
Target:  5'- cGCCCGAGggcUGCAa-GAUCGCGGCCc -3'
miRNA:   3'- cUGGGCUCa--GCGUagUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 36003 0.67 0.961127
Target:  5'- cGACCCGcuccCGCGUCGuccaccGCCGCGuCCGa -3'
miRNA:   3'- -CUGGGCuca-GCGUAGU------UGGCGUuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.