miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 111274 0.66 0.973291
Target:  5'- aGCuuGAuGUCGaCGUC--CCGCGGCCAg -3'
miRNA:   3'- cUGggCU-CAGC-GUAGuuGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 131222 0.66 0.973291
Target:  5'- cGCUCGAcGUCGCgGUCGgagGCCGCGgugGCCu -3'
miRNA:   3'- cUGGGCU-CAGCG-UAGU---UGGCGU---UGGu -5'
8977 5' -54.9 NC_002512.2 + 219298 0.66 0.973291
Target:  5'- uGGCCCGcuUCGUcgU--CCGCGGCCAc -3'
miRNA:   3'- -CUGGGCucAGCGuaGuuGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 44513 0.66 0.973291
Target:  5'- aGCaCCG-GUgGCAUgGACCGC-GCCAc -3'
miRNA:   3'- cUG-GGCuCAgCGUAgUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 108591 0.66 0.973291
Target:  5'- -uUCCGggcggagagcGGUCGCAaguUCGACCGCGuCCGc -3'
miRNA:   3'- cuGGGC----------UCAGCGU---AGUUGGCGUuGGU- -5'
8977 5' -54.9 NC_002512.2 + 34931 0.66 0.97167
Target:  5'- cGACggCgGGGUCGCggCGacggggagcggagcgGCCGCGACCGg -3'
miRNA:   3'- -CUG--GgCUCAGCGuaGU---------------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 96607 0.66 0.97167
Target:  5'- gGACCgGAG-CGCGgagacgCGggggagggcgaggaaACCGCGACCGg -3'
miRNA:   3'- -CUGGgCUCaGCGUa-----GU---------------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 106797 0.66 0.97167
Target:  5'- -gUCgGGGUCGaCGUCGggagggggcgaggccGCCGCGACCu -3'
miRNA:   3'- cuGGgCUCAGC-GUAGU---------------UGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 194232 0.66 0.97055
Target:  5'- cGugCCGGuGUCGuCGUCGAgcaugaugauauUCGCGGCCGc -3'
miRNA:   3'- -CugGGCU-CAGC-GUAGUU------------GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 109067 0.66 0.97055
Target:  5'- gGACCCGc--CGCGUCccggguccgagaGACCGCcGCCGu -3'
miRNA:   3'- -CUGGGCucaGCGUAG------------UUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 54604 0.66 0.97055
Target:  5'- -cCCCGAGUaCGUGUacgCGGCCGcCAGCUAc -3'
miRNA:   3'- cuGGGCUCA-GCGUA---GUUGGC-GUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 44022 0.66 0.97055
Target:  5'- cGGCCCGAGgCGCccuccUCGacguACCGCucCCAg -3'
miRNA:   3'- -CUGGGCUCaGCGu----AGU----UGGCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 187818 0.66 0.97055
Target:  5'- cGGCCCuGGUCGUccaGACCGUccggAGCCAg -3'
miRNA:   3'- -CUGGGcUCAGCGuagUUGGCG----UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 1747 0.66 0.96969
Target:  5'- gGACCUGAGcUCGCGcccgUCGGCgcccagcacgacguUGCGGCCGa -3'
miRNA:   3'- -CUGGGCUC-AGCGU----AGUUG--------------GCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 110110 0.66 0.967613
Target:  5'- -uUCUGGGUCcccgcCGUCGACCGCGACg- -3'
miRNA:   3'- cuGGGCUCAGc----GUAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 49111 0.66 0.967613
Target:  5'- cACCCGGGgcaUCGCc-CGGCUGCAcGCCAa -3'
miRNA:   3'- cUGGGCUC---AGCGuaGUUGGCGU-UGGU- -5'
8977 5' -54.9 NC_002512.2 + 29233 0.66 0.967613
Target:  5'- cGGCCgCGGGUCGCG-CAGuCCGUccuCCGa -3'
miRNA:   3'- -CUGG-GCUCAGCGUaGUU-GGCGuu-GGU- -5'
8977 5' -54.9 NC_002512.2 + 8405 0.66 0.967613
Target:  5'- gGACgCCGAG-CGCcaggaacgCGcACCGCGGCCGg -3'
miRNA:   3'- -CUG-GGCUCaGCGua------GU-UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 60879 0.66 0.967613
Target:  5'- cGCCCGGaUCGCcgagcCGGCgCGCGACCGc -3'
miRNA:   3'- cUGGGCUcAGCGua---GUUG-GCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 24375 0.66 0.967613
Target:  5'- cGCUCGaAGUCGuCGUCcuCCGCGACg- -3'
miRNA:   3'- cUGGGC-UCAGC-GUAGuuGGCGUUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.