miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 36003 0.67 0.961127
Target:  5'- cGACCCGcuccCGCGUCGuccaccGCCGCGuCCGa -3'
miRNA:   3'- -CUGGGCuca-GCGUAGU------UGGCGUuGGU- -5'
8977 5' -54.9 NC_002512.2 + 37041 0.68 0.931561
Target:  5'- cACUCGGGUCGCuccGUCAACCuCGuCCAc -3'
miRNA:   3'- cUGGGCUCAGCG---UAGUUGGcGUuGGU- -5'
8977 5' -54.9 NC_002512.2 + 37227 0.66 0.964149
Target:  5'- aGAUCCGAGUgGgG-CAGCCGCccccgcgAGCCGu -3'
miRNA:   3'- -CUGGGCUCAgCgUaGUUGGCG-------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 39809 0.69 0.903591
Target:  5'- --gCCGAGccCGCugacCGGCCGCGGCCAg -3'
miRNA:   3'- cugGGCUCa-GCGua--GUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 39869 0.68 0.931561
Target:  5'- gGAUCau-GUCgGCcUCGACCGCGGCCAa -3'
miRNA:   3'- -CUGGgcuCAG-CGuAGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 40320 0.66 0.967613
Target:  5'- cGGCCCGGucggaagcagacGUCGCAccagCAgauGCCGCGgacGCCGa -3'
miRNA:   3'- -CUGGGCU------------CAGCGUa---GU---UGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 42819 0.71 0.831292
Target:  5'- -cCCCGAGUcCGUAUCAauuGCCGUuuucACCAu -3'
miRNA:   3'- cuGGGCUCA-GCGUAGU---UGGCGu---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 44022 0.66 0.97055
Target:  5'- cGGCCCGAGgCGCccuccUCGacguACCGCucCCAg -3'
miRNA:   3'- -CUGGGCUCaGCGu----AGU----UGGCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 44513 0.66 0.973291
Target:  5'- aGCaCCG-GUgGCAUgGACCGC-GCCAc -3'
miRNA:   3'- cUG-GGCuCAgCGUAgUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 44677 0.68 0.931561
Target:  5'- cGACgCGGGccaccgCgGCGUCGACCGCcGCCGc -3'
miRNA:   3'- -CUGgGCUCa-----G-CGUAGUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 45043 0.67 0.957569
Target:  5'- gGACCCGAGgaugagCGaGUCGAuggaggugUCGCGGCCGg -3'
miRNA:   3'- -CUGGGCUCa-----GCgUAGUU--------GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 45933 0.67 0.944272
Target:  5'- cGCCCGAGcgCGCGUCccgggagcagaaccAGCCG-AGCCGc -3'
miRNA:   3'- cUGGGCUCa-GCGUAG--------------UUGGCgUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 49111 0.66 0.967613
Target:  5'- cACCCGGGgcaUCGCc-CGGCUGCAcGCCAa -3'
miRNA:   3'- cUGGGCUC---AGCGuaGUUGGCGU-UGGU- -5'
8977 5' -54.9 NC_002512.2 + 54321 0.67 0.953405
Target:  5'- uGACCCGccgguacaAGucggugacggugaUCGCcUCGAUCGCGGCCAc -3'
miRNA:   3'- -CUGGGC--------UC-------------AGCGuAGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 54604 0.66 0.97055
Target:  5'- -cCCCGAGUaCGUGUacgCGGCCGcCAGCUAc -3'
miRNA:   3'- cuGGGCUCA-GCGUA---GUUGGC-GUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 56256 0.67 0.953795
Target:  5'- gGACCCGGGguUCGCc---GCCGCGGCgGa -3'
miRNA:   3'- -CUGGGCUC--AGCGuaguUGGCGUUGgU- -5'
8977 5' -54.9 NC_002512.2 + 58014 0.67 0.941137
Target:  5'- gGACgCCGAGgacgGCGUuccgcccccuccCGGCCGCGGCCGg -3'
miRNA:   3'- -CUG-GGCUCag--CGUA------------GUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 59053 0.69 0.877154
Target:  5'- -gUCCGGGUCGCcgCcGCUGCcGCCGc -3'
miRNA:   3'- cuGGGCUCAGCGuaGuUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 59302 0.66 0.974335
Target:  5'- gGACUCGGGUCGgGaCAcggcgacggaggagaACUGCGACCu -3'
miRNA:   3'- -CUGGGCUCAGCgUaGU---------------UGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 60708 0.66 0.975843
Target:  5'- gGACCCGcacuucacGGUCaacaaGUAUguaUAACCGCGACCGc -3'
miRNA:   3'- -CUGGGC--------UCAG-----CGUA---GUUGGCGUUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.