miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 29233 0.66 0.967613
Target:  5'- cGGCCgCGGGUCGCG-CAGuCCGUccuCCGa -3'
miRNA:   3'- -CUGG-GCUCAGCGUaGUU-GGCGuu-GGU- -5'
8977 5' -54.9 NC_002512.2 + 110110 0.66 0.967613
Target:  5'- -uUCUGGGUCcccgcCGUCGACCGCGACg- -3'
miRNA:   3'- cuGGGCUCAGc----GUAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 111274 0.66 0.973291
Target:  5'- aGCuuGAuGUCGaCGUC--CCGCGGCCAg -3'
miRNA:   3'- cUGggCU-CAGC-GUAGuuGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 201829 0.66 0.973291
Target:  5'- cGCCCGGGg-GC-UCcuuCCGCGGCCGg -3'
miRNA:   3'- cUGGGCUCagCGuAGuu-GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 170049 0.66 0.975843
Target:  5'- uGGCCauGGcCGCcgCcGCCGCGGCCGc -3'
miRNA:   3'- -CUGGgcUCaGCGuaGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 124185 0.66 0.975843
Target:  5'- -cCCCGAG-CGCGgcguUCGGCaCGCAcaucACCAc -3'
miRNA:   3'- cuGGGCUCaGCGU----AGUUG-GCGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 107000 0.66 0.973291
Target:  5'- cGCCCGGGcCgGgGUCGGCCGagAGCCGg -3'
miRNA:   3'- cUGGGCUCaG-CgUAGUUGGCg-UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 95211 0.66 0.975843
Target:  5'- cGCCCGcuggugacGGaUCGCGUCGGCCccGCAcucgGCCAc -3'
miRNA:   3'- cUGGGC--------UC-AGCGUAGUUGG--CGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 102282 0.66 0.975843
Target:  5'- cGGCUCGGcgCGCGUCGACCGCcagGGCg- -3'
miRNA:   3'- -CUGGGCUcaGCGUAGUUGGCG---UUGgu -5'
8977 5' -54.9 NC_002512.2 + 141602 0.66 0.973291
Target:  5'- cAUCCGAGcCGCGUCccgacacgccuGCCGCcACCu -3'
miRNA:   3'- cUGGGCUCaGCGUAGu----------UGGCGuUGGu -5'
8977 5' -54.9 NC_002512.2 + 28588 0.66 0.975843
Target:  5'- uGAUCCGAGcggugCGCGUCAucuCgGUGGCCu -3'
miRNA:   3'- -CUGGGCUCa----GCGUAGUu--GgCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 60708 0.66 0.975843
Target:  5'- gGACCCGcacuucacGGUCaacaaGUAUguaUAACCGCGACCGc -3'
miRNA:   3'- -CUGGGC--------UCAG-----CGUA---GUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 107139 0.66 0.964474
Target:  5'- cGGCCCGGG-CGCccccAUCAGCgCGUuuCCGc -3'
miRNA:   3'- -CUGGGCUCaGCG----UAGUUG-GCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 80656 0.66 0.964474
Target:  5'- cGGCgCCGGGUC-CGUCGGucCCGCGGCg- -3'
miRNA:   3'- -CUG-GGCUCAGcGUAGUU--GGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 103093 0.66 0.96316
Target:  5'- cGAuCCCGGGgacgggcgcggcaCGCGUCGccGCCGCcGCCGc -3'
miRNA:   3'- -CU-GGGCUCa------------GCGUAGU--UGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 206568 0.66 0.975843
Target:  5'- cGGCCCGGGgCGCcagAACUGCAgguGCCGu -3'
miRNA:   3'- -CUGGGCUCaGCGuagUUGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 29323 0.66 0.964474
Target:  5'- gGACCgCGGG-CGCGauUCcccccgauACCGCGACCGc -3'
miRNA:   3'- -CUGG-GCUCaGCGU--AGu-------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 139215 0.66 0.964474
Target:  5'- uGGCCCuGGcCGCcgCGGCCGCcgacuccgaGACCGc -3'
miRNA:   3'- -CUGGGcUCaGCGuaGUUGGCG---------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 37227 0.66 0.964149
Target:  5'- aGAUCCGAGUgGgG-CAGCCGCccccgcgAGCCGu -3'
miRNA:   3'- -CUGGGCUCAgCgUaGUUGGCG-------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 131222 0.66 0.973291
Target:  5'- cGCUCGAcGUCGCgGUCGgagGCCGCGgugGCCu -3'
miRNA:   3'- cUGGGCU-CAGCG-UAGU---UGGCGU---UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.