Results 21 - 40 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8977 | 5' | -54.9 | NC_002512.2 | + | 137337 | 0.69 | 0.88409 |
Target: 5'- -cUCCGAcgucGUCGCcgCGgccGCCGCGGCCGg -3' miRNA: 3'- cuGGGCU----CAGCGuaGU---UGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 70969 | 0.69 | 0.88409 |
Target: 5'- -cCCCGccgaAGcCGUAcUCGGCCGCGACCGa -3' miRNA: 3'- cuGGGC----UCaGCGU-AGUUGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 126795 | 0.71 | 0.805912 |
Target: 5'- aACCCGAccUGCuUCGGCUGCGACCGg -3' miRNA: 3'- cUGGGCUcaGCGuAGUUGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 130131 | 0.71 | 0.805912 |
Target: 5'- aGGCCCGGGguggUGUcgCGGCCGCGggGCCc -3' miRNA: 3'- -CUGGGCUCa---GCGuaGUUGGCGU--UGGu -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 126968 | 0.71 | 0.78822 |
Target: 5'- cGACCUGGGgccCGUggccGUCGACCGC-GCCAg -3' miRNA: 3'- -CUGGGCUCa--GCG----UAGUUGGCGuUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 126425 | 0.72 | 0.741763 |
Target: 5'- aGACCCGAGcCGCGUCcucgGACCcGCGcucggACCGg -3' miRNA: 3'- -CUGGGCUCaGCGUAG----UUGG-CGU-----UGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 95968 | 0.73 | 0.701895 |
Target: 5'- aGGCCCGGGUuggCGCAgcggCGgucggcguccggcGCCGCGACCGc -3' miRNA: 3'- -CUGGGCUCA---GCGUa---GU-------------UGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 25192 | 0.74 | 0.673084 |
Target: 5'- --gCCGAcGUCGCGUCcGCCGCGACgGa -3' miRNA: 3'- cugGGCU-CAGCGUAGuUGGCGUUGgU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 157488 | 0.75 | 0.592781 |
Target: 5'- cGACCgCGAGaacgaUCaGCGUCcACCGCGACCAg -3' miRNA: 3'- -CUGG-GCUC-----AG-CGUAGuUGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 101797 | 0.76 | 0.557001 |
Target: 5'- aGGCCCGGGUCGgcgcguaccgcucaaUAUCAaucacgacgacGCCGCGACCGu -3' miRNA: 3'- -CUGGGCUCAGC---------------GUAGU-----------UGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 128308 | 0.71 | 0.814535 |
Target: 5'- cGCCCGAGUCGCggCAcCUGCucuGCUg -3' miRNA: 3'- cUGGGCUCAGCGuaGUuGGCGu--UGGu -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 116716 | 0.71 | 0.822997 |
Target: 5'- cGACgCCG-GUCGCGUCccgcccGGCCGCGGCgAg -3' miRNA: 3'- -CUG-GGCuCAGCGUAG------UUGGCGUUGgU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 102135 | 0.69 | 0.88409 |
Target: 5'- gGACCCuGGcCGUcuaCGGCCGCGACCGc -3' miRNA: 3'- -CUGGGcUCaGCGua-GUUGGCGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 59053 | 0.69 | 0.877154 |
Target: 5'- -gUCCGGGUCGCcgCcGCUGCcGCCGc -3' miRNA: 3'- cuGGGCUCAGCGuaGuUGGCGuUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 76729 | 0.7 | 0.870007 |
Target: 5'- -cCCCGuaGGUCGCcuuUCcgGACCGCGACCc -3' miRNA: 3'- cuGGGC--UCAGCGu--AG--UUGGCGUUGGu -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 101644 | 0.7 | 0.870007 |
Target: 5'- cGCUCGAGgggagCGCggCGGCCGCGgacGCCGg -3' miRNA: 3'- cUGGGCUCa----GCGuaGUUGGCGU---UGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 12283 | 0.7 | 0.860408 |
Target: 5'- cGCCCGAGUCGCcgaCGacccccgaggcggcGCCGCcgGACCGg -3' miRNA: 3'- cUGGGCUCAGCGua-GU--------------UGGCG--UUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 7422 | 0.7 | 0.855099 |
Target: 5'- cGACCgCGAGggccggCGCgagGUUGGCCGCGGCCc -3' miRNA: 3'- -CUGG-GCUCa-----GCG---UAGUUGGCGUUGGu -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 6815 | 0.7 | 0.84735 |
Target: 5'- gGACCCGGGUC---UCGGCCacggugGCGACCAg -3' miRNA: 3'- -CUGGGCUCAGcguAGUUGG------CGUUGGU- -5' |
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8977 | 5' | -54.9 | NC_002512.2 | + | 78375 | 0.71 | 0.831292 |
Target: 5'- -uCCCGuGUCGCGcgAACCGCGagGCCGg -3' miRNA: 3'- cuGGGCuCAGCGUagUUGGCGU--UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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