miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 137337 0.69 0.88409
Target:  5'- -cUCCGAcgucGUCGCcgCGgccGCCGCGGCCGg -3'
miRNA:   3'- cuGGGCU----CAGCGuaGU---UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 6815 0.7 0.84735
Target:  5'- gGACCCGGGUC---UCGGCCacggugGCGACCAg -3'
miRNA:   3'- -CUGGGCUCAGcguAGUUGG------CGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 7422 0.7 0.855099
Target:  5'- cGACCgCGAGggccggCGCgagGUUGGCCGCGGCCc -3'
miRNA:   3'- -CUGG-GCUCa-----GCG---UAGUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 12283 0.7 0.860408
Target:  5'- cGCCCGAGUCGCcgaCGacccccgaggcggcGCCGCcgGACCGg -3'
miRNA:   3'- cUGGGCUCAGCGua-GU--------------UGGCG--UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 101644 0.7 0.870007
Target:  5'- cGCUCGAGgggagCGCggCGGCCGCGgacGCCGg -3'
miRNA:   3'- cUGGGCUCa----GCGuaGUUGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 76729 0.7 0.870007
Target:  5'- -cCCCGuaGGUCGCcuuUCcgGACCGCGACCc -3'
miRNA:   3'- cuGGGC--UCAGCGu--AG--UUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 59053 0.69 0.877154
Target:  5'- -gUCCGGGUCGCcgCcGCUGCcGCCGc -3'
miRNA:   3'- cuGGGCUCAGCGuaGuUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 102135 0.69 0.88409
Target:  5'- gGACCCuGGcCGUcuaCGGCCGCGACCGc -3'
miRNA:   3'- -CUGGGcUCaGCGua-GUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 70969 0.69 0.88409
Target:  5'- -cCCCGccgaAGcCGUAcUCGGCCGCGACCGa -3'
miRNA:   3'- cuGGGC----UCaGCGU-AGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 78375 0.71 0.831292
Target:  5'- -uCCCGuGUCGCGcgAACCGCGagGCCGg -3'
miRNA:   3'- cuGGGCuCAGCGUagUUGGCGU--UGGU- -5'
8977 5' -54.9 NC_002512.2 + 116716 0.71 0.822997
Target:  5'- cGACgCCG-GUCGCGUCccgcccGGCCGCGGCgAg -3'
miRNA:   3'- -CUG-GGCuCAGCGUAG------UUGGCGUUGgU- -5'
8977 5' -54.9 NC_002512.2 + 128308 0.71 0.814535
Target:  5'- cGCCCGAGUCGCggCAcCUGCucuGCUg -3'
miRNA:   3'- cUGGGCUCAGCGuaGUuGGCGu--UGGu -5'
8977 5' -54.9 NC_002512.2 + 101797 0.76 0.557001
Target:  5'- aGGCCCGGGUCGgcgcguaccgcucaaUAUCAaucacgacgacGCCGCGACCGu -3'
miRNA:   3'- -CUGGGCUCAGC---------------GUAGU-----------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 157488 0.75 0.592781
Target:  5'- cGACCgCGAGaacgaUCaGCGUCcACCGCGACCAg -3'
miRNA:   3'- -CUGG-GCUC-----AG-CGUAGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 25192 0.74 0.673084
Target:  5'- --gCCGAcGUCGCGUCcGCCGCGACgGa -3'
miRNA:   3'- cugGGCU-CAGCGUAGuUGGCGUUGgU- -5'
8977 5' -54.9 NC_002512.2 + 95968 0.73 0.701895
Target:  5'- aGGCCCGGGUuggCGCAgcggCGgucggcguccggcGCCGCGACCGc -3'
miRNA:   3'- -CUGGGCUCA---GCGUa---GU-------------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 126425 0.72 0.741763
Target:  5'- aGACCCGAGcCGCGUCcucgGACCcGCGcucggACCGg -3'
miRNA:   3'- -CUGGGCUCaGCGUAG----UUGG-CGU-----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 126968 0.71 0.78822
Target:  5'- cGACCUGGGgccCGUggccGUCGACCGC-GCCAg -3'
miRNA:   3'- -CUGGGCUCa--GCG----UAGUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 130131 0.71 0.805912
Target:  5'- aGGCCCGGGguggUGUcgCGGCCGCGggGCCc -3'
miRNA:   3'- -CUGGGCUCa---GCGuaGUUGGCGU--UGGu -5'
8977 5' -54.9 NC_002512.2 + 126795 0.71 0.805912
Target:  5'- aACCCGAccUGCuUCGGCUGCGACCGg -3'
miRNA:   3'- cUGGGCUcaGCGuAGUUGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.