miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 197536 1.09 0.005543
Target:  5'- cGACCCGAGUCGCAUCAACCGCAACCAg -3'
miRNA:   3'- -CUGGGCUCAGCGUAGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 135323 0.77 0.514174
Target:  5'- -cCCCGAGgUCgGCGUCAGCCGC-GCCGg -3'
miRNA:   3'- cuGGGCUC-AG-CGUAGUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 94232 0.76 0.533491
Target:  5'- aGGCCUGGGUCGCgAUCAggccGCCGgCGACCc -3'
miRNA:   3'- -CUGGGCUCAGCG-UAGU----UGGC-GUUGGu -5'
8977 5' -54.9 NC_002512.2 + 101797 0.76 0.557001
Target:  5'- aGGCCCGGGUCGgcgcguaccgcucaaUAUCAaucacgacgacGCCGCGACCGu -3'
miRNA:   3'- -CUGGGCUCAGC---------------GUAGU-----------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 157488 0.75 0.592781
Target:  5'- cGACCgCGAGaacgaUCaGCGUCcACCGCGACCAg -3'
miRNA:   3'- -CUGG-GCUC-----AG-CGUAGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 155287 0.75 0.622882
Target:  5'- cGCuCCG-GUcCGCGUCGGCCGUGACCAu -3'
miRNA:   3'- cUG-GGCuCA-GCGUAGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 147873 0.74 0.672085
Target:  5'- cGACCCGGGcgacggcUCGCcgCGACCGCccCCGa -3'
miRNA:   3'- -CUGGGCUC-------AGCGuaGUUGGCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 25192 0.74 0.673084
Target:  5'- --gCCGAcGUCGCGUCcGCCGCGACgGa -3'
miRNA:   3'- cugGGCU-CAGCGUAGuUGGCGUUGgU- -5'
8977 5' -54.9 NC_002512.2 + 95968 0.73 0.701895
Target:  5'- aGGCCCGGGUuggCGCAgcggCGgucggcguccggcGCCGCGACCGc -3'
miRNA:   3'- -CUGGGCUCA---GCGUa---GU-------------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 177078 0.73 0.719551
Target:  5'- uGACCCGcGUC-CGUCAGCCcccgcugcgucuccGCGACCAg -3'
miRNA:   3'- -CUGGGCuCAGcGUAGUUGG--------------CGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 101868 0.72 0.741763
Target:  5'- cGACCCG-GcCGCAgCAGCCGCGGgCGa -3'
miRNA:   3'- -CUGGGCuCaGCGUaGUUGGCGUUgGU- -5'
8977 5' -54.9 NC_002512.2 + 126425 0.72 0.741763
Target:  5'- aGACCCGAGcCGCGUCcucgGACCcGCGcucggACCGg -3'
miRNA:   3'- -CUGGGCUCaGCGUAG----UUGG-CGU-----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 223784 0.71 0.78732
Target:  5'- gGACCgGAcGUCGCcggggacGUCGGCgGCGACCGc -3'
miRNA:   3'- -CUGGgCU-CAGCG-------UAGUUGgCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 126968 0.71 0.78822
Target:  5'- cGACCUGGGgccCGUggccGUCGACCGC-GCCAg -3'
miRNA:   3'- -CUGGGCUCa--GCG----UAGUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 124285 0.71 0.794477
Target:  5'- gGACCCGGGcgUGCGgcUCGACCGCGcggagcugaucgggGCCGc -3'
miRNA:   3'- -CUGGGCUCa-GCGU--AGUUGGCGU--------------UGGU- -5'
8977 5' -54.9 NC_002512.2 + 211783 0.71 0.797138
Target:  5'- aGGCCCGGGUgGCcgCGggggccgucccGCCGCGGCgCAc -3'
miRNA:   3'- -CUGGGCUCAgCGuaGU-----------UGGCGUUG-GU- -5'
8977 5' -54.9 NC_002512.2 + 126795 0.71 0.805912
Target:  5'- aACCCGAccUGCuUCGGCUGCGACCGg -3'
miRNA:   3'- cUGGGCUcaGCGuAGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 130131 0.71 0.805912
Target:  5'- aGGCCCGGGguggUGUcgCGGCCGCGggGCCc -3'
miRNA:   3'- -CUGGGCUCa---GCGuaGUUGGCGU--UGGu -5'
8977 5' -54.9 NC_002512.2 + 194930 0.71 0.811965
Target:  5'- gGACCCG-GUCGCGgcCGcuccgcuccccgucGCCGCGACCc -3'
miRNA:   3'- -CUGGGCuCAGCGUa-GU--------------UGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 216537 0.71 0.814535
Target:  5'- cGCCCGAGUCGUAgcagCGGCgCGCgAACgCAg -3'
miRNA:   3'- cUGGGCUCAGCGUa---GUUG-GCG-UUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.