miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 128308 0.71 0.814535
Target:  5'- cGCCCGAGUCGCggCAcCUGCucuGCUg -3'
miRNA:   3'- cUGGGCUCAGCGuaGUuGGCGu--UGGu -5'
8977 5' -54.9 NC_002512.2 + 185343 0.71 0.822158
Target:  5'- cGCCCGGGUgGCcgccgccaucgccGUCGACUGCGACa- -3'
miRNA:   3'- cUGGGCUCAgCG-------------UAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 116716 0.71 0.822997
Target:  5'- cGACgCCG-GUCGCGUCccgcccGGCCGCGGCgAg -3'
miRNA:   3'- -CUG-GGCuCAGCGUAG------UUGGCGUUGgU- -5'
8977 5' -54.9 NC_002512.2 + 103474 0.71 0.822997
Target:  5'- cGGCUCGGGUCucgGCggCGGCCGCgGACCGc -3'
miRNA:   3'- -CUGGGCUCAG---CGuaGUUGGCG-UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 213273 0.71 0.822997
Target:  5'- gGGCCCGuGUgcuuCAUCAGCCGCGugGCCGa -3'
miRNA:   3'- -CUGGGCuCAgc--GUAGUUGGCGU--UGGU- -5'
8977 5' -54.9 NC_002512.2 + 78375 0.71 0.831292
Target:  5'- -uCCCGuGUCGCGcgAACCGCGagGCCGg -3'
miRNA:   3'- cuGGGCuCAGCGUagUUGGCGU--UGGU- -5'
8977 5' -54.9 NC_002512.2 + 42819 0.71 0.831292
Target:  5'- -cCCCGAGUcCGUAUCAauuGCCGUuuucACCAu -3'
miRNA:   3'- cuGGGCUCA-GCGUAGU---UGGCGu---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 160634 0.71 0.831292
Target:  5'- aGAUCCGGGaCGCGgacgacccuggaUCGACCGCGGCg- -3'
miRNA:   3'- -CUGGGCUCaGCGU------------AGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 149144 0.71 0.831292
Target:  5'- gGACCCGGGacCGCcgCGggGCCGguGCCGc -3'
miRNA:   3'- -CUGGGCUCa-GCGuaGU--UGGCguUGGU- -5'
8977 5' -54.9 NC_002512.2 + 143785 0.71 0.831292
Target:  5'- cGCCCGGGUC-CAUgAGCCGcCGGCUg -3'
miRNA:   3'- cUGGGCUCAGcGUAgUUGGC-GUUGGu -5'
8977 5' -54.9 NC_002512.2 + 119369 0.7 0.839412
Target:  5'- cGACUCGc-UCGCGgcgcgCGGCCGCAACCc -3'
miRNA:   3'- -CUGGGCucAGCGUa----GUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 120146 0.7 0.84735
Target:  5'- aGACCCGAGgacccgCGCAacCGGCCGCGcuucCCGa -3'
miRNA:   3'- -CUGGGCUCa-----GCGUa-GUUGGCGUu---GGU- -5'
8977 5' -54.9 NC_002512.2 + 6815 0.7 0.84735
Target:  5'- gGACCCGGGUC---UCGGCCacggugGCGACCAg -3'
miRNA:   3'- -CUGGGCUCAGcguAGUUGG------CGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 7422 0.7 0.855099
Target:  5'- cGACCgCGAGggccggCGCgagGUUGGCCGCGGCCc -3'
miRNA:   3'- -CUGG-GCUCa-----GCG---UAGUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 211172 0.7 0.855099
Target:  5'- uGCCCGAG-CGCGUC-GCCGCccuGCUc -3'
miRNA:   3'- cUGGGCUCaGCGUAGuUGGCGu--UGGu -5'
8977 5' -54.9 NC_002512.2 + 12283 0.7 0.860408
Target:  5'- cGCCCGAGUCGCcgaCGacccccgaggcggcGCCGCcgGACCGg -3'
miRNA:   3'- cUGGGCUCAGCGua-GU--------------UGGCG--UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 184954 0.7 0.862653
Target:  5'- uGGCUCGAGagcauggagCGCGUCcGCCGCGcgGCCGu -3'
miRNA:   3'- -CUGGGCUCa--------GCGUAGuUGGCGU--UGGU- -5'
8977 5' -54.9 NC_002512.2 + 101644 0.7 0.870007
Target:  5'- cGCUCGAGgggagCGCggCGGCCGCGgacGCCGg -3'
miRNA:   3'- cUGGGCUCa----GCGuaGUUGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 76729 0.7 0.870007
Target:  5'- -cCCCGuaGGUCGCcuuUCcgGACCGCGACCc -3'
miRNA:   3'- cuGGGC--UCAGCGu--AG--UUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 90641 0.7 0.870007
Target:  5'- cGACCCG-G-CGCcgCGGCCGCggUCu -3'
miRNA:   3'- -CUGGGCuCaGCGuaGUUGGCGuuGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.