miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 8405 0.66 0.967613
Target:  5'- gGACgCCGAG-CGCcaggaacgCGcACCGCGGCCGg -3'
miRNA:   3'- -CUG-GGCUCaGCGua------GU-UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 37227 0.66 0.964149
Target:  5'- aGAUCCGAGUgGgG-CAGCCGCccccgcgAGCCGu -3'
miRNA:   3'- -CUGGGCUCAgCgUaGUUGGCG-------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 188370 0.66 0.973291
Target:  5'- aGACCCGAGUUGCcgCAcgggagAUgGCGgggaGCCu -3'
miRNA:   3'- -CUGGGCUCAGCGuaGU------UGgCGU----UGGu -5'
8977 5' -54.9 NC_002512.2 + 40320 0.66 0.967613
Target:  5'- cGGCCCGGucggaagcagacGUCGCAccagCAgauGCCGCGgacGCCGa -3'
miRNA:   3'- -CUGGGCU------------CAGCGUa---GU---UGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 54604 0.66 0.97055
Target:  5'- -cCCCGAGUaCGUGUacgCGGCCGcCAGCUAc -3'
miRNA:   3'- cuGGGCUCA-GCGUA---GUUGGC-GUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 139215 0.66 0.964474
Target:  5'- uGGCCCuGGcCGCcgCGGCCGCcgacuccgaGACCGc -3'
miRNA:   3'- -CUGGGcUCaGCGuaGUUGGCG---------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 29323 0.66 0.964474
Target:  5'- gGACCgCGGG-CGCGauUCcccccgauACCGCGACCGc -3'
miRNA:   3'- -CUGG-GCUCaGCGU--AGu-------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 24375 0.66 0.967613
Target:  5'- cGCUCGaAGUCGuCGUCcuCCGCGACg- -3'
miRNA:   3'- cUGGGC-UCAGC-GUAGuuGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 60879 0.66 0.967613
Target:  5'- cGCCCGGaUCGCcgagcCGGCgCGCGACCGc -3'
miRNA:   3'- cUGGGCUcAGCGua---GUUG-GCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 103093 0.66 0.96316
Target:  5'- cGAuCCCGGGgacgggcgcggcaCGCGUCGccGCCGCcGCCGc -3'
miRNA:   3'- -CU-GGGCUCa------------GCGUAGU--UGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 107139 0.66 0.964474
Target:  5'- cGGCCCGGG-CGCccccAUCAGCgCGUuuCCGc -3'
miRNA:   3'- -CUGGGCUCaGCG----UAGUUG-GCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 34931 0.66 0.97167
Target:  5'- cGACggCgGGGUCGCggCGacggggagcggagcgGCCGCGACCGg -3'
miRNA:   3'- -CUG--GgCUCAGCGuaGU---------------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 29233 0.66 0.967613
Target:  5'- cGGCCgCGGGUCGCG-CAGuCCGUccuCCGa -3'
miRNA:   3'- -CUGG-GCUCAGCGUaGUU-GGCGuu-GGU- -5'
8977 5' -54.9 NC_002512.2 + 44022 0.66 0.97055
Target:  5'- cGGCCCGAGgCGCccuccUCGacguACCGCucCCAg -3'
miRNA:   3'- -CUGGGCUCaGCGu----AGU----UGGCGuuGGU- -5'
8977 5' -54.9 NC_002512.2 + 80656 0.66 0.964474
Target:  5'- cGGCgCCGGGUC-CGUCGGucCCGCGGCg- -3'
miRNA:   3'- -CUG-GGCUCAGcGUAGUU--GGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 49111 0.66 0.967613
Target:  5'- cACCCGGGgcaUCGCc-CGGCUGCAcGCCAa -3'
miRNA:   3'- cUGGGCUC---AGCGuaGUUGGCGU-UGGU- -5'
8977 5' -54.9 NC_002512.2 + 1747 0.66 0.96969
Target:  5'- gGACCUGAGcUCGCGcccgUCGGCgcccagcacgacguUGCGGCCGa -3'
miRNA:   3'- -CUGGGCUC-AGCGU----AGUUG--------------GCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 2007 0.66 0.973291
Target:  5'- cGCCCGcGUCGCcUgAGCCGgcACCAg -3'
miRNA:   3'- cUGGGCuCAGCGuAgUUGGCguUGGU- -5'
8977 5' -54.9 NC_002512.2 + 110110 0.66 0.967613
Target:  5'- -uUCUGGGUCcccgcCGUCGACCGCGACg- -3'
miRNA:   3'- cuGGGCUCAGc----GUAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 106797 0.66 0.97167
Target:  5'- -gUCgGGGUCGaCGUCGggagggggcgaggccGCCGCGACCu -3'
miRNA:   3'- cuGGgCUCAGC-GUAGU---------------UGGCGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.