miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 1747 0.66 0.96969
Target:  5'- gGACCUGAGcUCGCGcccgUCGGCgcccagcacgacguUGCGGCCGa -3'
miRNA:   3'- -CUGGGCUC-AGCGU----AGUUG--------------GCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 2007 0.66 0.973291
Target:  5'- cGCCCGcGUCGCcUgAGCCGgcACCAg -3'
miRNA:   3'- cUGGGCuCAGCGuAgUUGGCguUGGU- -5'
8977 5' -54.9 NC_002512.2 + 2245 0.69 0.903591
Target:  5'- gGACCCGGG-CGCuccGUCGccugaccucGCCGCcGCCGc -3'
miRNA:   3'- -CUGGGCUCaGCG---UAGU---------UGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 2389 0.67 0.941137
Target:  5'- -cCCCGGGUCGCggcGUCuccuACCuccucGCGGCCGg -3'
miRNA:   3'- cuGGGCUCAGCG---UAGu---UGG-----CGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 4157 0.68 0.936464
Target:  5'- cGACUgagCGAGUCGCcgCGGCuCGCGGgCGa -3'
miRNA:   3'- -CUGG---GCUCAGCGuaGUUG-GCGUUgGU- -5'
8977 5' -54.9 NC_002512.2 + 6815 0.7 0.84735
Target:  5'- gGACCCGGGUC---UCGGCCacggugGCGACCAg -3'
miRNA:   3'- -CUGGGCUCAGcguAGUUGG------CGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 6997 0.66 0.975843
Target:  5'- aGCCCucgaAGUCGCAggagAGCCGCAggGCCu -3'
miRNA:   3'- cUGGGc---UCAGCGUag--UUGGCGU--UGGu -5'
8977 5' -54.9 NC_002512.2 + 7392 0.66 0.967613
Target:  5'- gGACgaCGA-UCGCGUCGACUGCAAUg- -3'
miRNA:   3'- -CUGg-GCUcAGCGUAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 7422 0.7 0.855099
Target:  5'- cGACCgCGAGggccggCGCgagGUUGGCCGCGGCCc -3'
miRNA:   3'- -CUGG-GCUCa-----GCG---UAGUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 8405 0.66 0.967613
Target:  5'- gGACgCCGAG-CGCcaggaacgCGcACCGCGGCCGg -3'
miRNA:   3'- -CUG-GGCUCaGCGua------GU-UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 12283 0.7 0.860408
Target:  5'- cGCCCGAGUCGCcgaCGacccccgaggcggcGCCGCcgGACCGg -3'
miRNA:   3'- cUGGGCUCAGCGua-GU--------------UGGCG--UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 14768 0.66 0.975596
Target:  5'- gGACCCcGGcCGUucuggcgGUCGGCCGCGGCg- -3'
miRNA:   3'- -CUGGGcUCaGCG-------UAGUUGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 18143 0.67 0.953795
Target:  5'- cGCCCGGGcCGCGUCGcggGCCa-GGCCGa -3'
miRNA:   3'- cUGGGCUCaGCGUAGU---UGGcgUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 24375 0.66 0.967613
Target:  5'- cGCUCGaAGUCGuCGUCcuCCGCGACg- -3'
miRNA:   3'- cUGGGC-UCAGC-GUAGuuGGCGUUGgu -5'
8977 5' -54.9 NC_002512.2 + 25192 0.74 0.673084
Target:  5'- --gCCGAcGUCGCGUCcGCCGCGACgGa -3'
miRNA:   3'- cugGGCU-CAGCGUAGuUGGCGUUGgU- -5'
8977 5' -54.9 NC_002512.2 + 26550 0.67 0.961127
Target:  5'- cGCCCGAGggcUGCAa-GAUCGCGGCCc -3'
miRNA:   3'- cUGGGCUCa--GCGUagUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 28588 0.66 0.975843
Target:  5'- uGAUCCGAGcggugCGCGUCAucuCgGUGGCCu -3'
miRNA:   3'- -CUGGGCUCa----GCGUAGUu--GgCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 29233 0.66 0.967613
Target:  5'- cGGCCgCGGGUCGCG-CAGuCCGUccuCCGa -3'
miRNA:   3'- -CUGG-GCUCAGCGUaGUU-GGCGuu-GGU- -5'
8977 5' -54.9 NC_002512.2 + 29323 0.66 0.964474
Target:  5'- gGACCgCGGG-CGCGauUCcccccgauACCGCGACCGc -3'
miRNA:   3'- -CUGG-GCUCaGCGU--AGu-------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 34931 0.66 0.97167
Target:  5'- cGACggCgGGGUCGCggCGacggggagcggagcgGCCGCGACCGg -3'
miRNA:   3'- -CUG--GgCUCAGCGuaGU---------------UGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.