miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 228580 0.66 0.964474
Target:  5'- --aCCGcGGUCGUGUCGGCgGCAggcGCCGg -3'
miRNA:   3'- cugGGC-UCAGCGUAGUUGgCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 225907 0.67 0.9498
Target:  5'- -uCCCGAGgagaCGCGUCGACCGagggGACg- -3'
miRNA:   3'- cuGGGCUCa---GCGUAGUUGGCg---UUGgu -5'
8977 5' -54.9 NC_002512.2 + 224624 0.67 0.941137
Target:  5'- gGGCUCgGGGUCGCc---GCCGCGGCCu -3'
miRNA:   3'- -CUGGG-CUCAGCGuaguUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 223784 0.71 0.78732
Target:  5'- gGACCgGAcGUCGCcggggacGUCGGCgGCGACCGc -3'
miRNA:   3'- -CUGGgCU-CAGCG-------UAGUUGgCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 219962 0.66 0.967613
Target:  5'- -cCCCGGGUCGCGcgcUCAaaaaagACUGCGggACCu -3'
miRNA:   3'- cuGGGCUCAGCGU---AGU------UGGCGU--UGGu -5'
8977 5' -54.9 NC_002512.2 + 219298 0.66 0.973291
Target:  5'- uGGCCCGcuUCGUcgU--CCGCGGCCAc -3'
miRNA:   3'- -CUGGGCucAGCGuaGuuGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 216537 0.71 0.814535
Target:  5'- cGCCCGAGUCGUAgcagCGGCgCGCgAACgCAg -3'
miRNA:   3'- cUGGGCUCAGCGUa---GUUG-GCG-UUG-GU- -5'
8977 5' -54.9 NC_002512.2 + 216184 0.66 0.964149
Target:  5'- -uCUCGGGaUCGCGcccgugaUCAccGCCGCGGCCGu -3'
miRNA:   3'- cuGGGCUC-AGCGU-------AGU--UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 215093 0.67 0.945581
Target:  5'- --aCCGAGgacuUCGUcgCcGCCGCGGCCGa -3'
miRNA:   3'- cugGGCUC----AGCGuaGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 214892 0.67 0.945581
Target:  5'- aGCCCGgacaagcugcGGgacuuucugCGCGUCcACCGCGGCCGc -3'
miRNA:   3'- cUGGGC----------UCa--------GCGUAGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 213273 0.71 0.822997
Target:  5'- gGGCCCGuGUgcuuCAUCAGCCGCGugGCCGa -3'
miRNA:   3'- -CUGGGCuCAgc--GUAGUUGGCGU--UGGU- -5'
8977 5' -54.9 NC_002512.2 + 212970 0.66 0.967308
Target:  5'- -uCCgGGGUCGagaucugcgaccuCAUCGucGCCGCGGCCGu -3'
miRNA:   3'- cuGGgCUCAGC-------------GUAGU--UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 211783 0.71 0.797138
Target:  5'- aGGCCCGGGUgGCcgCGggggccgucccGCCGCGGCgCAc -3'
miRNA:   3'- -CUGGGCUCAgCGuaGU-----------UGGCGUUG-GU- -5'
8977 5' -54.9 NC_002512.2 + 211172 0.7 0.855099
Target:  5'- uGCCCGAG-CGCGUC-GCCGCccuGCUc -3'
miRNA:   3'- cUGGGCUCaGCGUAGuUGGCGu--UGGu -5'
8977 5' -54.9 NC_002512.2 + 207476 0.69 0.875032
Target:  5'- -gUCCGAGUCGCucgucucggcgcccGUCuccggauCCGCGACCGa -3'
miRNA:   3'- cuGGGCUCAGCG--------------UAGuu-----GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 206568 0.66 0.975843
Target:  5'- cGGCCCGGGgCGCcagAACUGCAgguGCCGu -3'
miRNA:   3'- -CUGGGCUCaGCGuagUUGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 205524 0.67 0.941137
Target:  5'- cGACuUCGAG-CGCAUaCAGCgGCAGCUg -3'
miRNA:   3'- -CUG-GGCUCaGCGUA-GUUGgCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 201942 0.66 0.964474
Target:  5'- gGGCCCGGGUaCGUGggaGACCGCucuCCc -3'
miRNA:   3'- -CUGGGCUCA-GCGUag-UUGGCGuu-GGu -5'
8977 5' -54.9 NC_002512.2 + 201829 0.66 0.973291
Target:  5'- cGCCCGGGg-GC-UCcuuCCGCGGCCGg -3'
miRNA:   3'- cUGGGCUCagCGuAGuu-GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 197536 1.09 0.005543
Target:  5'- cGACCCGAGUCGCAUCAACCGCAACCAg -3'
miRNA:   3'- -CUGGGCUCAGCGUAGUUGGCGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.