miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 5' -54.9 NC_002512.2 + 124185 0.66 0.975843
Target:  5'- -cCCCGAG-CGCGgcguUCGGCaCGCAcaucACCAc -3'
miRNA:   3'- cuGGGCUCaGCGU----AGUUG-GCGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 44513 0.66 0.973291
Target:  5'- aGCaCCG-GUgGCAUgGACCGC-GCCAc -3'
miRNA:   3'- cUG-GGCuCAgCGUAgUUGGCGuUGGU- -5'
8977 5' -54.9 NC_002512.2 + 194232 0.66 0.97055
Target:  5'- cGugCCGGuGUCGuCGUCGAgcaugaugauauUCGCGGCCGc -3'
miRNA:   3'- -CugGGCU-CAGC-GUAGUU------------GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 197536 1.09 0.005543
Target:  5'- cGACCCGAGUCGCAUCAACCGCAACCAg -3'
miRNA:   3'- -CUGGGCUCAGCGUAGUUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 178689 0.66 0.975843
Target:  5'- -gUCCGAGgccCGCAgcgCGGCCGCcgcguugcuGGCCAg -3'
miRNA:   3'- cuGGGCUCa--GCGUa--GUUGGCG---------UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 170049 0.66 0.975843
Target:  5'- uGGCCauGGcCGCcgCcGCCGCGGCCGc -3'
miRNA:   3'- -CUGGgcUCaGCGuaGuUGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 121145 0.66 0.975843
Target:  5'- cGGCggCCGAGaCGC--CGGCCGCGGCCc -3'
miRNA:   3'- -CUG--GGCUCaGCGuaGUUGGCGUUGGu -5'
8977 5' -54.9 NC_002512.2 + 102282 0.66 0.975843
Target:  5'- cGGCUCGGcgCGCGUCGACCGCcagGGCg- -3'
miRNA:   3'- -CUGGGCUcaGCGUAGUUGGCG---UUGgu -5'
8977 5' -54.9 NC_002512.2 + 201829 0.66 0.973291
Target:  5'- cGCCCGGGg-GC-UCcuuCCGCGGCCGg -3'
miRNA:   3'- cUGGGCUCagCGuAGuu-GGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 108591 0.66 0.973291
Target:  5'- -uUCCGggcggagagcGGUCGCAaguUCGACCGCGuCCGc -3'
miRNA:   3'- cuGGGC----------UCAGCGU---AGUUGGCGUuGGU- -5'
8977 5' -54.9 NC_002512.2 + 131222 0.66 0.973291
Target:  5'- cGCUCGAcGUCGCgGUCGgagGCCGCGgugGCCu -3'
miRNA:   3'- cUGGGCU-CAGCG-UAGU---UGGCGU---UGGu -5'
8977 5' -54.9 NC_002512.2 + 111274 0.66 0.973291
Target:  5'- aGCuuGAuGUCGaCGUC--CCGCGGCCAg -3'
miRNA:   3'- cUGggCU-CAGC-GUAGuuGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 95211 0.66 0.975843
Target:  5'- cGCCCGcuggugacGGaUCGCGUCGGCCccGCAcucgGCCAc -3'
miRNA:   3'- cUGGGC--------UC-AGCGUAGUUGG--CGU----UGGU- -5'
8977 5' -54.9 NC_002512.2 + 107000 0.66 0.973291
Target:  5'- cGCCCGGGcCgGgGUCGGCCGagAGCCGg -3'
miRNA:   3'- cUGGGCUCaG-CgUAGUUGGCg-UUGGU- -5'
8977 5' -54.9 NC_002512.2 + 206568 0.66 0.975843
Target:  5'- cGGCCCGGGgCGCcagAACUGCAgguGCCGu -3'
miRNA:   3'- -CUGGGCUCaGCGuagUUGGCGU---UGGU- -5'
8977 5' -54.9 NC_002512.2 + 77423 0.66 0.975843
Target:  5'- gGACCCGGGaCGCcUCccaacGCCGCGcGCCc -3'
miRNA:   3'- -CUGGGCUCaGCGuAGu----UGGCGU-UGGu -5'
8977 5' -54.9 NC_002512.2 + 219298 0.66 0.973291
Target:  5'- uGGCCCGcuUCGUcgU--CCGCGGCCAc -3'
miRNA:   3'- -CUGGGCucAGCGuaGuuGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 96607 0.66 0.97167
Target:  5'- gGACCgGAG-CGCGgagacgCGggggagggcgaggaaACCGCGACCGg -3'
miRNA:   3'- -CUGGgCUCaGCGUa-----GU---------------UGGCGUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 192812 0.66 0.975843
Target:  5'- cACCCGGGgCG-AUCGcACCGgGGCCAg -3'
miRNA:   3'- cUGGGCUCaGCgUAGU-UGGCgUUGGU- -5'
8977 5' -54.9 NC_002512.2 + 149242 0.66 0.975843
Target:  5'- gGACCCG-G-CGCcgCcGCCGCGgacgGCCGg -3'
miRNA:   3'- -CUGGGCuCaGCGuaGuUGGCGU----UGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.