miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 25106 0.68 0.924743
Target:  5'- gGCGUCuccuucCCCCGGU-CGUC-CCCGCg -3'
miRNA:   3'- -UGUAGcuc---GGGGUCAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 96950 0.68 0.924743
Target:  5'- gGCGUCGcGCCgaCCGucGUccGCGUCUUCCGCc -3'
miRNA:   3'- -UGUAGCuCGG--GGU--CA--UGUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 74613 0.68 0.919344
Target:  5'- gGC-UCGAGCCgCCu---CggCUCCCGCg -3'
miRNA:   3'- -UGuAGCUCGG-GGucauGuaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 226684 0.68 0.919344
Target:  5'- ---cUGAGCgCCGGgcCGUCgCCCGCg -3'
miRNA:   3'- uguaGCUCGgGGUCauGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 134778 0.68 0.919344
Target:  5'- ---cCGAGCCCCAcccGCGUC-CCCGg -3'
miRNA:   3'- uguaGCUCGGGGUca-UGUAGaGGGCg -5'
8978 5' -55.5 NC_002512.2 + 112924 0.68 0.913718
Target:  5'- gGCGUCGGcGgCCCGGUgGCGcgCgagCCCGCg -3'
miRNA:   3'- -UGUAGCU-CgGGGUCA-UGUa-Ga--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 191537 0.68 0.913718
Target:  5'- -gGUCGGGCgaCCCGGcGgAUC-CCCGCg -3'
miRNA:   3'- ugUAGCUCG--GGGUCaUgUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 136616 0.68 0.907867
Target:  5'- cGCAUgccCGuGCCCCugcuGUACAaccUCcCCCGCu -3'
miRNA:   3'- -UGUA---GCuCGGGGu---CAUGU---AGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 177083 0.68 0.907867
Target:  5'- cGCGUCcgucAGCCCCcGcUGCGUCU-CCGCg -3'
miRNA:   3'- -UGUAGc---UCGGGGuC-AUGUAGAgGGCG- -5'
8978 5' -55.5 NC_002512.2 + 127974 0.68 0.907867
Target:  5'- cGCAUgGAgaacacgccGCCCCcGUcgGCGUC-CCCGCg -3'
miRNA:   3'- -UGUAgCU---------CGGGGuCA--UGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 186909 0.68 0.901791
Target:  5'- uCGUCGGGaaCCAGcGCGUCUaCCUGCc -3'
miRNA:   3'- uGUAGCUCggGGUCaUGUAGA-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 98444 0.68 0.901791
Target:  5'- uACGUCGucCCCUGGUACGcgCgggagCCCGCc -3'
miRNA:   3'- -UGUAGCucGGGGUCAUGUa-Ga----GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 186543 0.69 0.895494
Target:  5'- cACGgggcCGAGCCCUuucccaAGU---UCUCCCGCa -3'
miRNA:   3'- -UGUa---GCUCGGGG------UCAuguAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 1690 0.69 0.895494
Target:  5'- gACcgCG-GCCUCgaAGUAgGUCUCCCGg -3'
miRNA:   3'- -UGuaGCuCGGGG--UCAUgUAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 109002 0.69 0.895494
Target:  5'- uCGUCG-GCgCCGGcgGCGUCgUCCUGCg -3'
miRNA:   3'- uGUAGCuCGgGGUCa-UGUAG-AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 120852 0.69 0.895494
Target:  5'- ---cCGAGCCCCcccGGUccuCGUC-CCCGCc -3'
miRNA:   3'- uguaGCUCGGGG---UCAu--GUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 50804 0.69 0.895494
Target:  5'- gGCGUCG-GCCCCGgcgcuGUACAgacaCUaCCUGCu -3'
miRNA:   3'- -UGUAGCuCGGGGU-----CAUGUa---GA-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 84510 0.69 0.895494
Target:  5'- cGCGUCGGGCuCCCAGU-CGUagccCUCGUa -3'
miRNA:   3'- -UGUAGCUCG-GGGUCAuGUAga--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 191607 0.69 0.888978
Target:  5'- -gGUCGAGUCCUcg-GCGUCUUCuCGCg -3'
miRNA:   3'- ugUAGCUCGGGGucaUGUAGAGG-GCG- -5'
8978 5' -55.5 NC_002512.2 + 38215 0.69 0.888978
Target:  5'- -gGUCGcccAGCCCCGGgacgcggACGUCU-CCGCc -3'
miRNA:   3'- ugUAGC---UCGGGGUCa------UGUAGAgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.