miRNA display CGI


Results 41 - 60 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 105622 0.66 0.949012
Target:  5'- gCACCgGcCGUCGUCGGUCuccGAGAcccgGCCg -3'
miRNA:   3'- -GUGGgC-GUAGCAGUCGGuc-UUCU----CGG- -5'
8979 3' -55.9 NC_002512.2 + 54835 0.66 0.949012
Target:  5'- gCACCCGCGgaacCGGCCGagcgcGAAG-GCCa -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGU-----CUUCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 107207 0.66 0.944784
Target:  5'- cCAgCCGgGcCG-CGGCCGG-GGAGCCg -3'
miRNA:   3'- -GUgGGCgUaGCaGUCGGUCuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 193250 0.66 0.944784
Target:  5'- uUACCCGCAccacCAGCCAGAAaccAGUCa -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGUCUUc--UCGG- -5'
8979 3' -55.9 NC_002512.2 + 115161 0.66 0.944784
Target:  5'- cUugCCGC-UCGUCAGCUuauucaggucguGGAAcgcgaugguguGGGCCg -3'
miRNA:   3'- -GugGGCGuAGCAGUCGG------------UCUU-----------CUCGG- -5'
8979 3' -55.9 NC_002512.2 + 133201 0.66 0.944784
Target:  5'- aACCCGUuaucuucgggacGUCGUCcGCCcagcgaggacGGGAGGGCg -3'
miRNA:   3'- gUGGGCG------------UAGCAGuCGG----------UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 18963 0.66 0.94435
Target:  5'- --aCUGCAUCG-CGGCgAugaugccGGAGAGCCg -3'
miRNA:   3'- gugGGCGUAGCaGUCGgU-------CUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 195055 0.66 0.94435
Target:  5'- gGCCCGCgggcgggaggGUCGUcCGGUCGGGgacucgaGGGGUCg -3'
miRNA:   3'- gUGGGCG----------UAGCA-GUCGGUCU-------UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 79844 0.66 0.943473
Target:  5'- cCGCCC-CGUCGUCcccGGCCcccucguccucggaGGAggaagAGAGCCc -3'
miRNA:   3'- -GUGGGcGUAGCAG---UCGG--------------UCU-----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 101311 0.67 0.940334
Target:  5'- -uCUCGCAggGUCGGCCcccGGAG-GCCg -3'
miRNA:   3'- guGGGCGUagCAGUCGGu--CUUCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 223263 0.67 0.940334
Target:  5'- -gUCCGCGUCGUCGGggGGcGGGAcGCCg -3'
miRNA:   3'- guGGGCGUAGCAGUCggUC-UUCU-CGG- -5'
8979 3' -55.9 NC_002512.2 + 207002 0.67 0.940334
Target:  5'- gGCCCGCGggGUCAGCau--GGuGGCCc -3'
miRNA:   3'- gUGGGCGUagCAGUCGgucuUC-UCGG- -5'
8979 3' -55.9 NC_002512.2 + 15261 0.67 0.940334
Target:  5'- gGCCCGCGUCcccgcgaggGUCcccucuagucgGGCUgcaGGAAGAGCg -3'
miRNA:   3'- gUGGGCGUAG---------CAG-----------UCGG---UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 135762 0.67 0.938955
Target:  5'- uCAUCCGCGUCcu-GGCCgacgagaggcuggcGGAGGAGUCg -3'
miRNA:   3'- -GUGGGCGUAGcagUCGG--------------UCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 112949 0.67 0.938491
Target:  5'- aGCCCGCGgaccgggucgaaGUCgaAGCCGGGgacgccguccgaGGAGCCc -3'
miRNA:   3'- gUGGGCGUag----------CAG--UCGGUCU------------UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 182649 0.67 0.937556
Target:  5'- gCGCCUGCGUC-UCGGCCucgccgaacuccuuGAugcgguucuGGGGCCg -3'
miRNA:   3'- -GUGGGCGUAGcAGUCGGu-------------CU---------UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 147286 0.67 0.935659
Target:  5'- aCGCCgCGCGUCGUUc-CCGGggGGGa- -3'
miRNA:   3'- -GUGG-GCGUAGCAGucGGUCuuCUCgg -5'
8979 3' -55.9 NC_002512.2 + 222196 0.67 0.935659
Target:  5'- gGCCgGCGUCGUCcguuucuucGUCGGGguggccgucGGGGCCg -3'
miRNA:   3'- gUGGgCGUAGCAGu--------CGGUCU---------UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 220423 0.67 0.935659
Target:  5'- cCGCCCGCcuaCGgcCAGCCGccGGAGCUc -3'
miRNA:   3'- -GUGGGCGua-GCa-GUCGGUcuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 100011 0.67 0.935658
Target:  5'- uCGgCCGCGUCGcgugCGGCCucaAGGGGCUc -3'
miRNA:   3'- -GUgGGCGUAGCa---GUCGGuc-UUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.