Results 21 - 40 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8979 | 3' | -55.9 | NC_002512.2 | + | 4668 | 0.66 | 0.960383 |
Target: 5'- cCGCCgGCG-CGUCgaAGCCcAGGAGGGaCUg -3' miRNA: 3'- -GUGGgCGUaGCAG--UCGG-UCUUCUC-GG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 118671 | 0.66 | 0.960383 |
Target: 5'- cCGCCCGuCAUCGUCuGuCCcGAcgucGGcGCCg -3' miRNA: 3'- -GUGGGC-GUAGCAGuC-GGuCU----UCuCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 33725 | 0.66 | 0.960383 |
Target: 5'- gGCUCGCcccUCGUCGaCCGGAgcgaGGAGCg -3' miRNA: 3'- gUGGGCGu--AGCAGUcGGUCU----UCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 132021 | 0.66 | 0.960035 |
Target: 5'- gACCucggcggCGaCGUCGUCGGCCAGGgaccggAGGGUg -3' miRNA: 3'- gUGG-------GC-GUAGCAGUCGGUCU------UCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 125257 | 0.66 | 0.960035 |
Target: 5'- gGCCCGCAcuuucugucCGUCcGCCuGGcgcaccuGGAGCCc -3' miRNA: 3'- gUGGGCGUa--------GCAGuCGGuCU-------UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 223820 | 0.66 | 0.959332 |
Target: 5'- cCGCUCGCG-CGUC-GCCAGAuucugacgauuggcAGAgagGCCg -3' miRNA: 3'- -GUGGGCGUaGCAGuCGGUCU--------------UCU---CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 225411 | 0.66 | 0.956807 |
Target: 5'- gCGCCgGgGUCGg-GGUCGGGuuGGGGCCg -3' miRNA: 3'- -GUGGgCgUAGCagUCGGUCU--UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 127393 | 0.66 | 0.956807 |
Target: 5'- -uCCCGCggCGggaacgacGCCgAGggGAGCCu -3' miRNA: 3'- guGGGCGuaGCagu-----CGG-UCuuCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 101005 | 0.66 | 0.956807 |
Target: 5'- gGCCCGUcUCGUCccucagcaGGCgCAGcaccAGGGCCc -3' miRNA: 3'- gUGGGCGuAGCAG--------UCG-GUCu---UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 142045 | 0.66 | 0.955318 |
Target: 5'- gACCCGCcgCGagggcccgacgccCGGCCGGggGAucGCUc -3' miRNA: 3'- gUGGGCGuaGCa------------GUCGGUCuuCU--CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 116319 | 0.66 | 0.95456 |
Target: 5'- uCACCCGCgacuucuucgagGUCGUCuucgccGCCuuccaccgggagacgGGGAGGGUCa -3' miRNA: 3'- -GUGGGCG------------UAGCAGu-----CGG---------------UCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 101129 | 0.66 | 0.953018 |
Target: 5'- gCGCUCGCGcagcgCGUCguagaccuugAGCCAGAAG-GCg -3' miRNA: 3'- -GUGGGCGUa----GCAG----------UCGGUCUUCuCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 191640 | 0.66 | 0.953018 |
Target: 5'- uCGCCCG-AUCGg-AGCCAGGAcGGCg -3' miRNA: 3'- -GUGGGCgUAGCagUCGGUCUUcUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 25876 | 0.66 | 0.953018 |
Target: 5'- gGCCCGCA-CGa-AGCC-GAAGAGgCg -3' miRNA: 3'- gUGGGCGUaGCagUCGGuCUUCUCgG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 154337 | 0.66 | 0.952627 |
Target: 5'- -gUCCGCGUCGUCGuccuccGCCAcggcgucGAGGGuGCCc -3' miRNA: 3'- guGGGCGUAGCAGU------CGGU-------CUUCU-CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 181381 | 0.66 | 0.950641 |
Target: 5'- aGCCgCGCGUCGUCGugcgcccuggccuccGCCGGGgacgcguucaGGAugGCCg -3' miRNA: 3'- gUGG-GCGUAGCAGU---------------CGGUCU----------UCU--CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 54835 | 0.66 | 0.949012 |
Target: 5'- gCACCCGCGgaacCGGCCGagcgcGAAG-GCCa -3' miRNA: 3'- -GUGGGCGUagcaGUCGGU-----CUUCuCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 105905 | 0.66 | 0.949012 |
Target: 5'- gGCUCGcCGUCGUCGuacacggaacGCCAGAgccccgAGGGUCc -3' miRNA: 3'- gUGGGC-GUAGCAGU----------CGGUCU------UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 186421 | 0.66 | 0.949012 |
Target: 5'- -uCCaCGCcgUGcUCGGCCGGcuGGGCCu -3' miRNA: 3'- guGG-GCGuaGC-AGUCGGUCuuCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 218961 | 0.66 | 0.949012 |
Target: 5'- gACCCcucCGUCGcCGGCUGGGAGguccGGCCc -3' miRNA: 3'- gUGGGc--GUAGCaGUCGGUCUUC----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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