Results 21 - 40 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8979 | 3' | -55.9 | NC_002512.2 | + | 67972 | 0.71 | 0.760872 |
Target: 5'- --gCCGUggCGUCcGCCGGAggAGGGCCg -3' miRNA: 3'- gugGGCGuaGCAGuCGGUCU--UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 151611 | 0.71 | 0.742104 |
Target: 5'- -gUCCGCG-CGUCGgagaacaacGUCAGGAGGGCCg -3' miRNA: 3'- guGGGCGUaGCAGU---------CGGUCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 20027 | 0.75 | 0.554873 |
Target: 5'- aGCCgGCGUCccgcaggCAGCC-GAAGAGCCg -3' miRNA: 3'- gUGGgCGUAGca-----GUCGGuCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 8991 | 0.75 | 0.554873 |
Target: 5'- aACUCGUagagGUCGUCGGCCAcgauGGAGAGCg -3' miRNA: 3'- gUGGGCG----UAGCAGUCGGU----CUUCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 139107 | 0.75 | 0.545126 |
Target: 5'- uCGCCCGCGucaccUCGUUGGCCaAGAAGcgcuucucGGCCg -3' miRNA: 3'- -GUGGGCGU-----AGCAGUCGG-UCUUC--------UCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 139976 | 0.75 | 0.535435 |
Target: 5'- uGCCCuGCAUCGUCuGCguGggGucGCCg -3' miRNA: 3'- gUGGG-CGUAGCAGuCGguCuuCu-CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 142156 | 0.76 | 0.51624 |
Target: 5'- -cCCCGCGUCG-CGuCCgAGAGGAGCCg -3' miRNA: 3'- guGGGCGUAGCaGUcGG-UCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 2006 | 0.76 | 0.505802 |
Target: 5'- uCGCCCGCGUCGcCugAGCCggcaccaGGAGGAGCg -3' miRNA: 3'- -GUGGGCGUAGCaG--UCGG-------UCUUCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 79903 | 0.77 | 0.43383 |
Target: 5'- -uCCCGCGUCGUCAGguCCAGGgugaAGGGCUc -3' miRNA: 3'- guGGGCGUAGCAGUC--GGUCU----UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 33505 | 0.78 | 0.398894 |
Target: 5'- gACCCGCggCGUCccgaagugagcccGGCCGGcGGAGCCu -3' miRNA: 3'- gUGGGCGuaGCAG-------------UCGGUCuUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 20818 | 0.74 | 0.574514 |
Target: 5'- -uCCCGCAcgaagaCGUC-GUCGGAGGAGCCg -3' miRNA: 3'- guGGGCGUa-----GCAGuCGGUCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 91723 | 0.73 | 0.654108 |
Target: 5'- aGCCCgGCGggugcggacaguUCGUCAGCCcGAAGAacGCCu -3' miRNA: 3'- gUGGG-CGU------------AGCAGUCGGuCUUCU--CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 53619 | 0.71 | 0.742104 |
Target: 5'- gACCCGaagcggAUCGUCGGCgGGGAGaAGCg -3' miRNA: 3'- gUGGGCg-----UAGCAGUCGgUCUUC-UCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 79958 | 0.71 | 0.741155 |
Target: 5'- cCGCCUGcCGUCGgaagcggUCGGCCgAGGAGGGCg -3' miRNA: 3'- -GUGGGC-GUAGC-------AGUCGG-UCUUCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 82042 | 0.72 | 0.732579 |
Target: 5'- gCGCCgGCggCGgucgCGGCgGGAGGAGUCg -3' miRNA: 3'- -GUGGgCGuaGCa---GUCGgUCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 10429 | 0.72 | 0.71717 |
Target: 5'- --aCCGCGUCGUCgccgucgggcacgggGGCgCGGAGGAGgCCg -3' miRNA: 3'- gugGGCGUAGCAG---------------UCG-GUCUUCUC-GG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 95009 | 0.72 | 0.703541 |
Target: 5'- aCGCgUCGCGUCGUCcgGGgCAGggGGGCg -3' miRNA: 3'- -GUG-GGCGUAGCAG--UCgGUCuuCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 33394 | 0.72 | 0.703541 |
Target: 5'- aACCCgGCGUcCGcCAGCCAGGcguAGuAGCCg -3' miRNA: 3'- gUGGG-CGUA-GCaGUCGGUCU---UC-UCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 3134 | 0.72 | 0.683882 |
Target: 5'- -cUCCGCGUCGUcCGGCC---GGAGCCc -3' miRNA: 3'- guGGGCGUAGCA-GUCGGucuUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 195455 | 0.72 | 0.682894 |
Target: 5'- aACCCGUcacgaucAUCGUCGucGUCAGAAGAcgGCCg -3' miRNA: 3'- gUGGGCG-------UAGCAGU--CGGUCUUCU--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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