miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 67972 0.71 0.760872
Target:  5'- --gCCGUggCGUCcGCCGGAggAGGGCCg -3'
miRNA:   3'- gugGGCGuaGCAGuCGGUCU--UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 3134 0.72 0.683882
Target:  5'- -cUCCGCGUCGUcCGGCC---GGAGCCc -3'
miRNA:   3'- guGGGCGUAGCA-GUCGGucuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 33394 0.72 0.703541
Target:  5'- aACCCgGCGUcCGcCAGCCAGGcguAGuAGCCg -3'
miRNA:   3'- gUGGG-CGUA-GCaGUCGGUCU---UC-UCGG- -5'
8979 3' -55.9 NC_002512.2 + 95009 0.72 0.703541
Target:  5'- aCGCgUCGCGUCGUCcgGGgCAGggGGGCg -3'
miRNA:   3'- -GUG-GGCGUAGCAG--UCgGUCuuCUCGg -5'
8979 3' -55.9 NC_002512.2 + 10429 0.72 0.71717
Target:  5'- --aCCGCGUCGUCgccgucgggcacgggGGCgCGGAGGAGgCCg -3'
miRNA:   3'- gugGGCGUAGCAG---------------UCG-GUCUUCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 82042 0.72 0.732579
Target:  5'- gCGCCgGCggCGgucgCGGCgGGAGGAGUCg -3'
miRNA:   3'- -GUGGgCGuaGCa---GUCGgUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 79958 0.71 0.741155
Target:  5'- cCGCCUGcCGUCGgaagcggUCGGCCgAGGAGGGCg -3'
miRNA:   3'- -GUGGGC-GUAGC-------AGUCGG-UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 53619 0.71 0.742104
Target:  5'- gACCCGaagcggAUCGUCGGCgGGGAGaAGCg -3'
miRNA:   3'- gUGGGCg-----UAGCAGUCGgUCUUC-UCGg -5'
8979 3' -55.9 NC_002512.2 + 151611 0.71 0.742104
Target:  5'- -gUCCGCG-CGUCGgagaacaacGUCAGGAGGGCCg -3'
miRNA:   3'- guGGGCGUaGCAGU---------CGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 195455 0.72 0.682894
Target:  5'- aACCCGUcacgaucAUCGUCGucGUCAGAAGAcgGCCg -3'
miRNA:   3'- gUGGGCG-------UAGCAGU--CGGUCUUCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 91723 0.73 0.654108
Target:  5'- aGCCCgGCGggugcggacaguUCGUCAGCCcGAAGAacGCCu -3'
miRNA:   3'- gUGGG-CGU------------AGCAGUCGGuCUUCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 20818 0.74 0.574514
Target:  5'- -uCCCGCAcgaagaCGUC-GUCGGAGGAGCCg -3'
miRNA:   3'- guGGGCGUa-----GCAGuCGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 33505 0.78 0.398894
Target:  5'- gACCCGCggCGUCccgaagugagcccGGCCGGcGGAGCCu -3'
miRNA:   3'- gUGGGCGuaGCAG-------------UCGGUCuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 79903 0.77 0.43383
Target:  5'- -uCCCGCGUCGUCAGguCCAGGgugaAGGGCUc -3'
miRNA:   3'- guGGGCGUAGCAGUC--GGUCU----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 2006 0.76 0.505802
Target:  5'- uCGCCCGCGUCGcCugAGCCggcaccaGGAGGAGCg -3'
miRNA:   3'- -GUGGGCGUAGCaG--UCGG-------UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 142156 0.76 0.51624
Target:  5'- -cCCCGCGUCG-CGuCCgAGAGGAGCCg -3'
miRNA:   3'- guGGGCGUAGCaGUcGG-UCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 139976 0.75 0.535435
Target:  5'- uGCCCuGCAUCGUCuGCguGggGucGCCg -3'
miRNA:   3'- gUGGG-CGUAGCAGuCGguCuuCu-CGG- -5'
8979 3' -55.9 NC_002512.2 + 139107 0.75 0.545126
Target:  5'- uCGCCCGCGucaccUCGUUGGCCaAGAAGcgcuucucGGCCg -3'
miRNA:   3'- -GUGGGCGU-----AGCAGUCGG-UCUUC--------UCGG- -5'
8979 3' -55.9 NC_002512.2 + 8991 0.75 0.554873
Target:  5'- aACUCGUagagGUCGUCGGCCAcgauGGAGAGCg -3'
miRNA:   3'- gUGGGCG----UAGCAGUCGGU----CUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 20027 0.75 0.554873
Target:  5'- aGCCgGCGUCccgcaggCAGCC-GAAGAGCCg -3'
miRNA:   3'- gUGGgCGUAGca-----GUCGGuCUUCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.