miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 116319 0.66 0.95456
Target:  5'- uCACCCGCgacuucuucgagGUCGUCuucgccGCCuuccaccgggagacgGGGAGGGUCa -3'
miRNA:   3'- -GUGGGCG------------UAGCAGu-----CGG---------------UCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 115161 0.66 0.944784
Target:  5'- cUugCCGC-UCGUCAGCUuauucaggucguGGAAcgcgaugguguGGGCCg -3'
miRNA:   3'- -GugGGCGuAGCAGUCGG------------UCUU-----------CUCGG- -5'
8979 3' -55.9 NC_002512.2 + 79844 0.66 0.943473
Target:  5'- cCGCCC-CGUCGUCcccGGCCcccucguccucggaGGAggaagAGAGCCc -3'
miRNA:   3'- -GUGGGcGUAGCAG---UCGG--------------UCU-----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 18963 0.66 0.94435
Target:  5'- --aCUGCAUCG-CGGCgAugaugccGGAGAGCCg -3'
miRNA:   3'- gugGGCGUAGCaGUCGgU-------CUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 121094 0.66 0.96276
Target:  5'- gCGCCCGCAgcggcccguagaguUCGgugacgacCAGCCGGAuc-GCCc -3'
miRNA:   3'- -GUGGGCGU--------------AGCa-------GUCGGUCUucuCGG- -5'
8979 3' -55.9 NC_002512.2 + 185212 0.66 0.960383
Target:  5'- -uUCCGCGUCGUCcacGUCAcGGGGGCg -3'
miRNA:   3'- guGGGCGUAGCAGu--CGGUcUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 25876 0.66 0.953018
Target:  5'- gGCCCGCA-CGa-AGCC-GAAGAGgCg -3'
miRNA:   3'- gUGGGCGUaGCagUCGGuCUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 33725 0.66 0.960383
Target:  5'- gGCUCGCcccUCGUCGaCCGGAgcgaGGAGCg -3'
miRNA:   3'- gUGGGCGu--AGCAGUcGGUCU----UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 1 0.66 0.963748
Target:  5'- gCACCCGUcgUGagGGCCGGuccuccucccccGGGGGCg -3'
miRNA:   3'- -GUGGGCGuaGCagUCGGUC------------UUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 101129 0.66 0.953018
Target:  5'- gCGCUCGCGcagcgCGUCguagaccuugAGCCAGAAG-GCg -3'
miRNA:   3'- -GUGGGCGUa----GCAG----------UCGGUCUUCuCGg -5'
8979 3' -55.9 NC_002512.2 + 133201 0.66 0.944784
Target:  5'- aACCCGUuaucuucgggacGUCGUCcGCCcagcgaggacGGGAGGGCg -3'
miRNA:   3'- gUGGGCG------------UAGCAGuCGG----------UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 118671 0.66 0.960383
Target:  5'- cCGCCCGuCAUCGUCuGuCCcGAcgucGGcGCCg -3'
miRNA:   3'- -GUGGGC-GUAGCAGuC-GGuCU----UCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 142045 0.66 0.955318
Target:  5'- gACCCGCcgCGagggcccgacgccCGGCCGGggGAucGCUc -3'
miRNA:   3'- gUGGGCGuaGCa------------GUCGGUCuuCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 54835 0.66 0.949012
Target:  5'- gCACCCGCGgaacCGGCCGagcgcGAAG-GCCa -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGU-----CUUCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 223820 0.66 0.959332
Target:  5'- cCGCUCGCG-CGUC-GCCAGAuucugacgauuggcAGAgagGCCg -3'
miRNA:   3'- -GUGGGCGUaGCAGuCGGUCU--------------UCU---CGG- -5'
8979 3' -55.9 NC_002512.2 + 4668 0.66 0.960383
Target:  5'- cCGCCgGCG-CGUCgaAGCCcAGGAGGGaCUg -3'
miRNA:   3'- -GUGGgCGUaGCAG--UCGG-UCUUCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 229405 0.66 0.963748
Target:  5'- gCACCCGUcgUGagGGCCGGuccuccucccccGGGGGCg -3'
miRNA:   3'- -GUGGGCGuaGCagUCGGUC------------UUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 193250 0.66 0.944784
Target:  5'- uUACCCGCAccacCAGCCAGAAaccAGUCa -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGUCUUc--UCGG- -5'
8979 3' -55.9 NC_002512.2 + 101005 0.66 0.956807
Target:  5'- gGCCCGUcUCGUCccucagcaGGCgCAGcaccAGGGCCc -3'
miRNA:   3'- gUGGGCGuAGCAG--------UCG-GUCu---UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 154337 0.66 0.952627
Target:  5'- -gUCCGCGUCGUCGuccuccGCCAcggcgucGAGGGuGCCc -3'
miRNA:   3'- guGGGCGUAGCAGU------CGGU-------CUUCU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.