miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 197274 1.11 0.00337
Target:  5'- uCACCCGCAUCGUCAGCCAGAAGAGCCu -3'
miRNA:   3'- -GUGGGCGUAGCAGUCGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 197466 0.87 0.123194
Target:  5'- uCGCCCGCuUCGUCAGCUucGggGAGCCc -3'
miRNA:   3'- -GUGGGCGuAGCAGUCGGu-CuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 81688 0.82 0.244967
Target:  5'- gCGCCCGCAgcUCGgCGGCCGGGAGGGUg -3'
miRNA:   3'- -GUGGGCGU--AGCaGUCGGUCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 165386 0.82 0.244967
Target:  5'- gGCCCGCAagGUCGGggcgcucaugguCCAGGAGGGCCg -3'
miRNA:   3'- gUGGGCGUagCAGUC------------GGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 33505 0.78 0.398894
Target:  5'- gACCCGCggCGUCccgaagugagcccGGCCGGcGGAGCCu -3'
miRNA:   3'- gUGGGCGuaGCAG-------------UCGGUCuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 177025 0.77 0.416564
Target:  5'- cCGCCUGCG-CGUCccGCCAGuuGAGCCg -3'
miRNA:   3'- -GUGGGCGUaGCAGu-CGGUCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 79903 0.77 0.43383
Target:  5'- -uCCCGCGUCGUCAGguCCAGGgugaAGGGCUc -3'
miRNA:   3'- guGGGCGUAGCAGUC--GGUCU----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 129842 0.76 0.469567
Target:  5'- -cCCCGCGUC-UCAGCgcccggCGGAGGAGCCc -3'
miRNA:   3'- guGGGCGUAGcAGUCG------GUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 121429 0.76 0.478735
Target:  5'- aCGCCCGCGgaGUCGGCCcc-GGAGCCc -3'
miRNA:   3'- -GUGGGCGUagCAGUCGGucuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 2006 0.76 0.505802
Target:  5'- uCGCCCGCGUCGcCugAGCCggcaccaGGAGGAGCg -3'
miRNA:   3'- -GUGGGCGUAGCaG--UCGG-------UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 219299 0.76 0.506747
Target:  5'- gGCCCGCuucGUCGUCcgcGGCCacgGGGAGAGCg -3'
miRNA:   3'- gUGGGCG---UAGCAG---UCGG---UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 142156 0.76 0.51624
Target:  5'- -cCCCGCGUCG-CGuCCgAGAGGAGCCg -3'
miRNA:   3'- guGGGCGUAGCaGUcGG-UCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 139976 0.75 0.535435
Target:  5'- uGCCCuGCAUCGUCuGCguGggGucGCCg -3'
miRNA:   3'- gUGGG-CGUAGCAGuCGguCuuCu-CGG- -5'
8979 3' -55.9 NC_002512.2 + 139107 0.75 0.545126
Target:  5'- uCGCCCGCGucaccUCGUUGGCCaAGAAGcgcuucucGGCCg -3'
miRNA:   3'- -GUGGGCGU-----AGCAGUCGG-UCUUC--------UCGG- -5'
8979 3' -55.9 NC_002512.2 + 20027 0.75 0.554873
Target:  5'- aGCCgGCGUCccgcaggCAGCC-GAAGAGCCg -3'
miRNA:   3'- gUGGgCGUAGca-----GUCGGuCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 8991 0.75 0.554873
Target:  5'- aACUCGUagagGUCGUCGGCCAcgauGGAGAGCg -3'
miRNA:   3'- gUGGGCG----UAGCAGUCGGU----CUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 222644 0.75 0.564671
Target:  5'- cCGCuCCGCcgCGaCGGCCGGccGGGCCg -3'
miRNA:   3'- -GUG-GGCGuaGCaGUCGGUCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 20818 0.74 0.574514
Target:  5'- -uCCCGCAcgaagaCGUC-GUCGGAGGAGCCg -3'
miRNA:   3'- guGGGCGUa-----GCAGuCGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 114187 0.74 0.584395
Target:  5'- gCGCCgGCGUCGggcccggCGGCCAuGAGGAGgCg -3'
miRNA:   3'- -GUGGgCGUAGCa------GUCGGU-CUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 185223 0.74 0.60425
Target:  5'- gGCCCGCGUCGUgGaacGCguGGgcgAGAGCCu -3'
miRNA:   3'- gUGGGCGUAGCAgU---CGguCU---UCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.