miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 195745 0.74 0.624183
Target:  5'- cCGCuCCGagGUCGUCGGCCGGAuccuGGGGaCCa -3'
miRNA:   3'- -GUG-GGCg-UAGCAGUCGGUCU----UCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 227602 0.73 0.634162
Target:  5'- cCACCCGCAg---CGGCCGGAGG-GCg -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGUCUUCuCGg -5'
8979 3' -55.9 NC_002512.2 + 148705 0.73 0.64414
Target:  5'- uCGCCCGgAUCGUCGGCgccaucaAGAGGAaagcGCCc -3'
miRNA:   3'- -GUGGGCgUAGCAGUCGg------UCUUCU----CGG- -5'
8979 3' -55.9 NC_002512.2 + 91723 0.73 0.654108
Target:  5'- aGCCCgGCGggugcggacaguUCGUCAGCCcGAAGAacGCCu -3'
miRNA:   3'- gUGGG-CGU------------AGCAGUCGGuCUUCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 226572 0.73 0.66406
Target:  5'- gGCUCGCGcUCccCGGCCAGGAGGGCg -3'
miRNA:   3'- gUGGGCGU-AGcaGUCGGUCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 226699 0.73 0.673987
Target:  5'- uCGCCCGCGgcggCGUCgAGCgaCGGGAG-GCCg -3'
miRNA:   3'- -GUGGGCGUa---GCAG-UCG--GUCUUCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 195455 0.72 0.682894
Target:  5'- aACCCGUcacgaucAUCGUCGucGUCAGAAGAcgGCCg -3'
miRNA:   3'- gUGGGCG-------UAGCAGU--CGGUCUUCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 3134 0.72 0.683882
Target:  5'- -cUCCGCGUCGUcCGGCC---GGAGCCc -3'
miRNA:   3'- guGGGCGUAGCA-GUCGGucuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 33394 0.72 0.703541
Target:  5'- aACCCgGCGUcCGcCAGCCAGGcguAGuAGCCg -3'
miRNA:   3'- gUGGG-CGUA-GCaGUCGGUCU---UC-UCGG- -5'
8979 3' -55.9 NC_002512.2 + 95009 0.72 0.703541
Target:  5'- aCGCgUCGCGUCGUCcgGGgCAGggGGGCg -3'
miRNA:   3'- -GUG-GGCGUAGCAG--UCgGUCuuCUCGg -5'
8979 3' -55.9 NC_002512.2 + 10429 0.72 0.71717
Target:  5'- --aCCGCGUCGUCgccgucgggcacgggGGCgCGGAGGAGgCCg -3'
miRNA:   3'- gugGGCGUAGCAG---------------UCG-GUCUUCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 82042 0.72 0.732579
Target:  5'- gCGCCgGCggCGgucgCGGCgGGAGGAGUCg -3'
miRNA:   3'- -GUGGgCGuaGCa---GUCGgUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 79958 0.71 0.741155
Target:  5'- cCGCCUGcCGUCGgaagcggUCGGCCgAGGAGGGCg -3'
miRNA:   3'- -GUGGGC-GUAGC-------AGUCGG-UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 53619 0.71 0.742104
Target:  5'- gACCCGaagcggAUCGUCGGCgGGGAGaAGCg -3'
miRNA:   3'- gUGGGCg-----UAGCAGUCGgUCUUC-UCGg -5'
8979 3' -55.9 NC_002512.2 + 151611 0.71 0.742104
Target:  5'- -gUCCGCG-CGUCGgagaacaacGUCAGGAGGGCCg -3'
miRNA:   3'- guGGGCGUaGCAGU---------CGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 106968 0.71 0.742104
Target:  5'- gCGCUCGCGcUCGUCcccguagaaGGCCGGGAcgcccGGGCCg -3'
miRNA:   3'- -GUGGGCGU-AGCAG---------UCGGUCUU-----CUCGG- -5'
8979 3' -55.9 NC_002512.2 + 205306 0.71 0.742104
Target:  5'- -cCCCGCGUCGaCGGaCCGGGAGGGa- -3'
miRNA:   3'- guGGGCGUAGCaGUC-GGUCUUCUCgg -5'
8979 3' -55.9 NC_002512.2 + 67972 0.71 0.760872
Target:  5'- --gCCGUggCGUCcGCCGGAggAGGGCCg -3'
miRNA:   3'- gugGGCGuaGCAGuCGGUCU--UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 80472 0.71 0.760872
Target:  5'- -cCCCGCcgCGguccccucgCGGCCcgucGAGGAGCCg -3'
miRNA:   3'- guGGGCGuaGCa--------GUCGGu---CUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 45245 0.71 0.760872
Target:  5'- gCGCCCGCGgacucgcCGUCGGCCgccGGcGGGGCg -3'
miRNA:   3'- -GUGGGCGUa------GCAGUCGG---UCuUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.