miRNA display CGI


Results 21 - 40 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 16258 0.68 0.890116
Target:  5'- uCGCCCGCGg---CGGCCA--AGAGUCa -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGUcuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 18963 0.66 0.94435
Target:  5'- --aCUGCAUCG-CGGCgAugaugccGGAGAGCCg -3'
miRNA:   3'- gugGGCGUAGCaGUCGgU-------CUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 19939 0.66 0.963748
Target:  5'- gACCCGCgcccgGUCGagCAGCC-GAAGA-CCu -3'
miRNA:   3'- gUGGGCG-----UAGCa-GUCGGuCUUCUcGG- -5'
8979 3' -55.9 NC_002512.2 + 20027 0.75 0.554873
Target:  5'- aGCCgGCGUCccgcaggCAGCC-GAAGAGCCg -3'
miRNA:   3'- gUGGgCGUAGca-----GUCGGuCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 20818 0.74 0.574514
Target:  5'- -uCCCGCAcgaagaCGUC-GUCGGAGGAGCCg -3'
miRNA:   3'- guGGGCGUa-----GCAGuCGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 25051 0.68 0.902845
Target:  5'- --aCCGcCGUCGUCcucCCGGAcGGAGCCg -3'
miRNA:   3'- gugGGC-GUAGCAGuc-GGUCU-UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 25876 0.66 0.953018
Target:  5'- gGCCCGCA-CGa-AGCC-GAAGAGgCg -3'
miRNA:   3'- gUGGGCGUaGCagUCGGuCUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 27744 0.67 0.930756
Target:  5'- cCACCCGCcccgCGgcggCGGCCgAGAccGGcGCCa -3'
miRNA:   3'- -GUGGGCGua--GCa---GUCGG-UCU--UCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 27908 0.68 0.883426
Target:  5'- aCACCgCGUAUCGguacCGGCU-GggGAGCg -3'
miRNA:   3'- -GUGG-GCGUAGCa---GUCGGuCuuCUCGg -5'
8979 3' -55.9 NC_002512.2 + 33394 0.72 0.703541
Target:  5'- aACCCgGCGUcCGcCAGCCAGGcguAGuAGCCg -3'
miRNA:   3'- gUGGG-CGUA-GCaGUCGGUCU---UC-UCGG- -5'
8979 3' -55.9 NC_002512.2 + 33505 0.78 0.398894
Target:  5'- gACCCGCggCGUCccgaagugagcccGGCCGGcGGAGCCu -3'
miRNA:   3'- gUGGGCGuaGCAG-------------UCGGUCuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 33725 0.66 0.960383
Target:  5'- gGCUCGCcccUCGUCGaCCGGAgcgaGGAGCg -3'
miRNA:   3'- gUGGGCGu--AGCAGUcGGUCU----UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 42897 0.68 0.902845
Target:  5'- gGCCCGCcgCGUagcccagcgCAccGCCAGGAcGGCCc -3'
miRNA:   3'- gUGGGCGuaGCA---------GU--CGGUCUUcUCGG- -5'
8979 3' -55.9 NC_002512.2 + 45245 0.71 0.760872
Target:  5'- gCGCCCGCGgacucgcCGUCGGCCgccGGcGGGGCg -3'
miRNA:   3'- -GUGGGCGUa------GCAGUCGG---UCuUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 51290 0.71 0.779206
Target:  5'- --aCCGaGUCGgcggCGGCCAGAcugaAGAGCCu -3'
miRNA:   3'- gugGGCgUAGCa---GUCGGUCU----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 53619 0.71 0.742104
Target:  5'- gACCCGaagcggAUCGUCGGCgGGGAGaAGCg -3'
miRNA:   3'- gUGGGCg-----UAGCAGUCGgUCUUC-UCGg -5'
8979 3' -55.9 NC_002512.2 + 54835 0.66 0.949012
Target:  5'- gCACCCGCGgaacCGGCCGagcgcGAAG-GCCa -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGU-----CUUCuCGG- -5'
8979 3' -55.9 NC_002512.2 + 55014 0.7 0.830943
Target:  5'- gUACUCGaCGUCGaUCgagAGCCGGucGGGCCg -3'
miRNA:   3'- -GUGGGC-GUAGC-AG---UCGGUCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 57747 0.67 0.915256
Target:  5'- gACCCGCugcccgucgcgcuccUCGUCGacgguGCCGGAcaGGAGCa -3'
miRNA:   3'- gUGGGCGu--------------AGCAGU-----CGGUCU--UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 67868 0.69 0.869415
Target:  5'- cCACCuCGC--CGUCGGCCAGgcGGuCCg -3'
miRNA:   3'- -GUGG-GCGuaGCAGUCGGUCuuCUcGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.