miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 1 0.66 0.963748
Target:  5'- gCACCCGUcgUGagGGCCGGuccuccucccccGGGGGCg -3'
miRNA:   3'- -GUGGGCGuaGCagUCGGUC------------UUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 1954 0.67 0.920271
Target:  5'- -cCCCGCcUCGUCcGCCGGcgucGGAGgCg -3'
miRNA:   3'- guGGGCGuAGCAGuCGGUCu---UCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 2006 0.76 0.505802
Target:  5'- uCGCCCGCGUCGcCugAGCCggcaccaGGAGGAGCg -3'
miRNA:   3'- -GUGGGCGUAGCaG--UCGG-------UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 2960 0.69 0.876524
Target:  5'- uGCCCGCAUCGUCuuccGCCccuuc-GCCg -3'
miRNA:   3'- gUGGGCGUAGCAGu---CGGucuucuCGG- -5'
8979 3' -55.9 NC_002512.2 + 3134 0.72 0.683882
Target:  5'- -cUCCGCGUCGUcCGGCC---GGAGCCc -3'
miRNA:   3'- guGGGCGUAGCA-GUCGGucuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 4095 0.66 0.963748
Target:  5'- cCGCCCGCGgcc-CGGCCGGcgcAGCCu -3'
miRNA:   3'- -GUGGGCGUagcaGUCGGUCuucUCGG- -5'
8979 3' -55.9 NC_002512.2 + 4668 0.66 0.960383
Target:  5'- cCGCCgGCG-CGUCgaAGCCcAGGAGGGaCUg -3'
miRNA:   3'- -GUGGgCGUaGCAG--UCGG-UCUUCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 4740 0.66 0.963748
Target:  5'- gGCauGCGUCGUCGacGgCGGAAGAGgCg -3'
miRNA:   3'- gUGggCGUAGCAGU--CgGUCUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 4872 0.69 0.854594
Target:  5'- cCGCgUGCggCGcCGGCUGGAGGAGCg -3'
miRNA:   3'- -GUGgGCGuaGCaGUCGGUCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 5093 0.71 0.779206
Target:  5'- uCGCCgGCGUCGgcgCGGgCGGGAGAGaCa -3'
miRNA:   3'- -GUGGgCGUAGCa--GUCgGUCUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 6179 0.71 0.760872
Target:  5'- -cCCCGUgcgaGUCGcCGGCCAGGAcGAuGCCg -3'
miRNA:   3'- guGGGCG----UAGCaGUCGGUCUU-CU-CGG- -5'
8979 3' -55.9 NC_002512.2 + 6953 0.67 0.920271
Target:  5'- gGCCgGCcagGUCGUUGGCCcgcgGGccGAGCCu -3'
miRNA:   3'- gUGGgCG---UAGCAGUCGG----UCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 8991 0.75 0.554873
Target:  5'- aACUCGUagagGUCGUCGGCCAcgauGGAGAGCg -3'
miRNA:   3'- gUGGGCG----UAGCAGUCGGU----CUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 10429 0.72 0.71717
Target:  5'- --aCCGCGUCGUCgccgucgggcacgggGGCgCGGAGGAGgCCg -3'
miRNA:   3'- gugGGCGUAGCAG---------------UCG-GUCUUCUC-GG- -5'
8979 3' -55.9 NC_002512.2 + 10631 0.7 0.830943
Target:  5'- cCugCCGgA-CGagCAGCCAGAGGcGGCCg -3'
miRNA:   3'- -GugGGCgUaGCa-GUCGGUCUUC-UCGG- -5'
8979 3' -55.9 NC_002512.2 + 11032 0.67 0.914117
Target:  5'- uGCCCcggGCGaccUCGUCGGCgaagucgCAGAgcAGGGCCg -3'
miRNA:   3'- gUGGG---CGU---AGCAGUCG-------GUCU--UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 11674 0.66 0.963748
Target:  5'- gGCCCGC--CG-CGGCCcGAggcgGGGGCCc -3'
miRNA:   3'- gUGGGCGuaGCaGUCGGuCU----UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 12171 0.69 0.839008
Target:  5'- cCGCCCcugaaGCGgaccUCGUCGacGCCggcggGGAAGAGCCa -3'
miRNA:   3'- -GUGGG-----CGU----AGCAGU--CGG-----UCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 15261 0.67 0.940334
Target:  5'- gGCCCGCGUCcccgcgaggGUCcccucuagucgGGCUgcaGGAAGAGCg -3'
miRNA:   3'- gUGGGCGUAG---------CAG-----------UCGG---UCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 16153 0.7 0.805747
Target:  5'- gCGCCCGgucggucaaCGUCGUCAGCUccgacgucGAAGaAGCCa -3'
miRNA:   3'- -GUGGGC---------GUAGCAGUCGGu-------CUUC-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.